From 14f050f8f30cd43c3d9764106846525d02a915b8 Mon Sep 17 00:00:00 2001
From: Jack Bond-Preston <jackbondpreston@outlook.com>
Date: Sun, 16 Jun 2024 18:25:00 +0100
Subject: [PATCH] vault update: 2024-06-16 18:25:00

Affected files:
Index.md
config.yml
output/mod/arguments.yml
output/mod/capabilities.json
output/mod/config.yml
output/mod/graphers.json
output/mod/guid.txt
output/mod/html/dynamic_footer_inclusions.html
output/mod/html/dynamic_inclusions.html
output/mod/html/graph.template.html
output/mod/html/graph_full_page.template.html
output/mod/html/note.template.html
output/mod/modfile_dependencies.json
output/mod/paths.json
output/mod/user_config.yml
---
 Index.md                                      |   1 +
 config.yml                                    | 517 ++++++++++++++++++
 output/mod/arguments.yml                      |   4 +
 output/mod/capabilities.json                  |   6 +
 output/mod/config.yml                         | 328 +++++++++++
 output/mod/graphers.json                      |  14 +
 output/mod/guid.txt                           |   1 +
 .../mod/html/dynamic_footer_inclusions.html   |   1 +
 output/mod/html/dynamic_inclusions.html       |   1 +
 output/mod/html/graph.template.html           |  26 +
 output/mod/html/graph_full_page.template.html | 114 ++++
 output/mod/html/note.template.html            | 171 ++++++
 output/mod/modfile_dependencies.json          | 174 ++++++
 output/mod/paths.json                         |  16 +
 output/mod/user_config.yml                    | 325 +++++++++++
 15 files changed, 1699 insertions(+)
 create mode 100644 Index.md
 create mode 100644 config.yml
 create mode 100644 output/mod/arguments.yml
 create mode 100644 output/mod/capabilities.json
 create mode 100644 output/mod/config.yml
 create mode 100644 output/mod/graphers.json
 create mode 100644 output/mod/guid.txt
 create mode 100644 output/mod/html/dynamic_footer_inclusions.html
 create mode 100644 output/mod/html/dynamic_inclusions.html
 create mode 100644 output/mod/html/graph.template.html
 create mode 100644 output/mod/html/graph_full_page.template.html
 create mode 100644 output/mod/html/note.template.html
 create mode 100644 output/mod/modfile_dependencies.json
 create mode 100644 output/mod/paths.json
 create mode 100644 output/mod/user_config.yml

diff --git a/Index.md b/Index.md
new file mode 100644
index 0000000..fd736fa
--- /dev/null
+++ b/Index.md
@@ -0,0 +1 @@
+Jack's Chinese Notes
\ No newline at end of file
diff --git a/config.yml b/config.yml
new file mode 100644
index 0000000..38091f5
--- /dev/null
+++ b/config.yml
@@ -0,0 +1,517 @@
+##########################################################################
+#                               PATHS                                    #
+##########################################################################
+# The note that will be used as the index.html
+# should be in obsidian_folder_path_str
+# Can be absent when toggles/compile_md == False
+# Use full path or relative path, but don't use ~/
+obsidian_entrypoint_path_str: './'
+
+# Input and output path of markdown files
+# This can be an absolute or a relative path (relative to the working directory when calling obsidianhtml)
+# Use full path or relative path, but don't use ~/
+md_folder_path_str:  'output/md'
+
+# Markdown entrypoint path
+# This has to be md_folder_path_str + '/index.md' when toggles/compile_md == True
+# This can be an absolute or a relative path (relative to the working directory when calling obsidianhtml)
+# Use full path or relative path, but don't use ~/
+md_entrypoint_path_str: 'output/md/index.md'
+
+# Output path of HTML files
+# This can be an absolute or a relative path (relative to the working directory when calling obsidianhtml)
+# Use full path or relative path, but don't use ~/
+html_output_folder_path_str: 'output/html'
+
+module_data_folder: 'output/mod'
+
+##########################################################################
+#                               GLOBAL                                   #
+##########################################################################
+# verbosity_ranks = {
+#     "quiet": 0,
+#     "error": 10,
+#     "warning": 15,
+#     "deprecation": 20,
+#     "info": 30,
+#     "debug": 100,
+# }
+verbosity: info 
+
+##########################################################################
+#                              MODULES                                   #
+##########################################################################
+module_list:
+  preparation:
+    # - name: set_subfolder
+    #   description: Overwrites html_url_prefix and related settings if --subfolder <value> is provided in the commandline
+
+    - name: process_config
+      description: Merges the user config with default config and runs checks.
+
+    - name: load_paths
+      description: Determine all paths of interest based on input.
+
+    - name: process_config_auto
+      description: Fills in auto values that can be read from the vault config.
+
+    - name: html_templater
+      description: Prepare and export templates used to create html output.
+      persistent: True
+
+    - name: load_graphers
+      persistent: True
+
+    - name: get_file_list
+      description: 
+        - Basic file listing based on include_folder/exclude_glob combination
+        - Further filtering can be done in further modules
+
+    - name: parse_metadata
+      description:
+        - Gets the metadata of each markdown file, and stores it under metadata/<rel_filepath>.json
+
+    - name: filter_on_metadata
+      description:
+        - Filter out markdown files that do not comply to certain metadata requirements
+
+    - name: copy_vault_to_tempdirectory
+      description: 
+        - Copy vault to temporary directory, so that we can edit the obsidian notes themselves safely.
+        - Must be persistent!
+      persistent: True
+
+    - name: prepare_output_folders
+      description: 
+        - Ensures the output folders are created
+        - Optionally removes previous output if it exists in the target directories
+
+  #   - name: hydrate_file_list
+  #     description:
+  #       - Read and parse the selected files, then create a dict with info such as rel_path, full_path, html_rel_path, etc
+
+  convert_note_to_markdown: []
+  convert_markdown_to_html: []
+
+  finalize:
+    - name: resource_logger
+      description:
+        - Creates the log of which module resources were accessed by which module
+        - Requires persistent meta_module of the same name to work!
+      persistent: True
+      method: finalize
+
+meta_modules_post:
+  - name: resource_logger
+    persistent: True
+
+# Will create an extra file under module_data_folder/versions/<guid> with timestamp and module name
+# for each module file written with the self.modfile(...).write() method.
+# Used for debugging purposes.
+keep_module_file_versions: False
+
+# Use the name of the module as a key in the dict below
+# For accurate configuration settings, consult the spec of the module in question.
+# Defaults of the modules are shown in the commented blocks
+module_config:
+  get_file_list:
+    include_glob:
+      value: '*'
+    exclude_glob:
+      value: 
+        - ".obsidian/**/*"
+        - ".trash/**/*"
+        - ".DS_Store/**/*"
+        - ".git/**/*"
+
+  # prepare_output_folders:
+  #   clean_existing: 
+  #     description: Files that exist in the output folders are deleted.
+  #     value: True
+  #   fail_on_existing: 
+  #     description: 
+  #       - Exit with error if output folders are not empty.
+  #       - Does nothing if clean_existing = True!
+  #     value: False
+    
+  # filter_on_metadata:
+  #   include_on: 
+  #     description: What metadata to include notes on. Empty list means True by default.
+  #     value: [[]]
+  #   exclude_on: 
+  #     description: What metadata to exclude on. Empty list means False by default
+  #     value: [[]] 
+
+##########################################################################
+#                              OPERATIONS                                #
+##########################################################################
+# When not an empty list, this setting will restrict the subfolders
+# of the vault that will be included. This allows you to ensure that
+# only those folders are included in the output. Links pointing to notes
+# outside of the included folders will be treated as non-existent.
+# Note that the obsidian_entrypoint_path_str needs to be in one of these folders.
+# Paths should be relative to the vault root.
+included_folders: []
+
+# Exclude glob
+# The paths are relative to obsidian_folder_path_str
+# - Start with slash to target specific folder: /subfolder
+# - Target any folder with name "subfolder": subfolder
+# Glob patterns supported for copy_vault_to_tempdir_method: shutil, shutil_walk, and for rsync for as far as rsync supports it natively
+#   When turning off copy_vault_to_tempdir, glob patterns are fully supported.
+# Rules are case sensitive if your filesystem is.
+exclude_glob:
+  - "/.obsidian"
+  - "/.trash"
+  - "/.DS_Store"
+  - "/.git"
+
+
+# Deprecated for exclude_glob
+exclude_subfolders: '<DEPRECATED>'
+
+# Number of links a note can be removed from the entrypoint note
+# -1 for no max depth
+# 0 means only the entrypoint note is processed
+# 1 means only direct children are processed (and the entrypoint of course)
+# and so forth. NOTE: DOES NOT APPLY TO INCLUSIONS!
+max_note_depth: -1
+
+# =============================== COPY VAULT SETTINGS ============================
+# Safety feature: make a copy of the provided vault, and operate on that, so that bugs are less likely to affect the vault data.
+# Should be fine to turn off if copying the vault takes too long / disk space is too limited.
+# The tempdir is automatically removed on exit of the program.
+copy_vault_to_tempdir: True
+
+# Determines the function to use to copy your vault over to the tempdir.
+# `default` will try to use rsync if it is installed, and otherwise use `shutil`
+# `rsync` will do the same, but give a warning when it falls back to shutil
+# `shutil` will just use shutil to copy. Use this when rsync is installed but is giving problems.
+# `shutil_walk` will walk the directory tree manually, and call the copy function for each branch. This has been seen to work better on Macs in some cases.
+copy_vault_to_tempdir_method: default
+
+# Enable to print the files being copied
+copy_vault_to_tempdir_follow_copy: false
+# =============================== /COPY VAULT SETTINGS ============================
+
+
+# ObsidianHtml needs to be able to discern between included notes and included files, because included files
+# need to be treated differently. This is a configurable setting because we might've missed certain suffixes
+# of files that are includable.
+included_file_suffixes: ['jpg', 'jpeg', 'gif', 'png', 'bmp', 'svg', 'mp4', 'webm', 'ogv', 'mov', 'mkv', 'mp3', 'wav', 'm4a', 'ogg', '3gp', 'flac', 'pdf']
+video_format_suffixes: ['mp4', 'webm', 'ogv', 'mov', 'mkv']
+audio_format_suffixes: ['mp3', 'webm', 'wav', 'm4a', 'ogg', '3gp', 'flac']
+
+# files that should be included via an <embed> tag:
+embeddable_file_suffixes: ['pdf']
+
+# How to populate non-Markdown files in the output directory.
+# Note that hard links do not work cross-filesystem, and some environments may need administrative rights to create links.
+# Hard links are also more prone to data loss due to the sharing of inodes. `symlink` is a good safe bet, if your environment works with it.
+# If you store your vault in a Git repository, you will need to modify `core.symlinks` in your gitconfig or else only the links will be committed; see `man git-config`.
+# `default` is `copy` for backwards compatibility to avoid breaking configurations.
+# `copy` simply copies the files from the input folder to the output.
+# `symlink` creates a symbolic link, or soft link, that points to the input file.
+# `hardlink` creates a hard link
+copy_output_file_method: default
+
+# If links should be fully resolved before linking.
+# This is useful on filesystems that do not allow symlinks of symlinks, or where these nested links can affect permissions, like on some BSDs.
+resolve_output_file_links: true
+
+# Used to strip the http url hostpart of a link to get a relative link
+# e.g. for value "https://git.com/user/repo/-/wikis/mywiki/" then:
+#   "https://git.com/user/repo/-/wikis/mywiki/folder/markdown.md" --> /folder/markdown.md
+md_source_host_urls: []
+
+##########################################################################
+#                             HTML OUTPUT                                #
+##########################################################################
+
+# Will be inputted into the Html template as page title
+# Not used anywhere else atm.
+site_name: 'Obsidian-Html/Notes'
+
+# Use when deploying to https://mydomain.com/html_prefix/ instead of https://mydomain.com/
+# use '/html_prefix' (prepend slash, no slash at the end)
+html_url_prefix: ''
+
+# Provide the fullpath to a template file to use instead of standard template.
+# Note that this file must contain at least "{content}" somewhere in the page.
+html_template_path_str: ''
+
+# Provide an array of custom inclusions (css, javascript, etc) that you would like to be included in the resultant html
+html_custom_inclusions: []
+html_custom_footer_inclusions: []
+
+navbar_links: []
+
+file_exports: []
+# file_exports:
+#   - encoding: binary
+#     src: Resources/Includes/favicon.ico
+#     dst: favicon.ico
+#   - src: Resources/Includes/christmas_snowflakes.js
+#     dst: obs.html/static/christmas_snowflakes.js
+
+##########################################################################
+#                    OPTIONAL BEHAVIOR / FEATURES                        #
+##########################################################################
+toggles:
+  stdout_current_file: False
+  
+  # Opt-in/-out of Obsidian->Md conversion, set to False when using proper markdown as input
+  compile_md: True
+
+  # Opt-in/-out of Md->Html conversion, set to False when only wanting to get proper markdown from Obsidian
+  compile_html: True
+
+  # For compatibility with vaults/notes that have the 'Strict Line Breaks' option enabled
+  # This is off by default in Obsidian; setting it to True will not insert <br> tags into multi-line paragraphs
+  # Can be true, false, or "auto". The latter will read the vault's app.json for the value.
+  strict_line_breaks: auto
+
+  # gitlab is case insensitive, this setting should be true when converting a wiki from that source
+  # might also be useful if you have markdown links in your vault
+  # note that this does not impact the output, Hello.md will be written to Hello.html
+  force_filename_to_lowercase: True
+
+  # Slugify all HTML links. Note this will affect most internal uses of filename as well, like when matching
+  # against exclusion lists.
+  slugify_html_links: False
+
+  # If this is false only the entrypoint and all its links (recursively) are processed
+  # if true all the notes will be processed
+  process_all: False
+
+  # Can be overwritten ad-hoc by using "obsidianhtml -i config.yml -v" (the -v option)
+  verbose_printout: False # deprecated for verbose
+
+  debug_filetree_keys: False
+
+  # This option should be False for Obsidian->Md, but can be True when compile_md == False
+  # Setting it to True will cause an error when two files with the same file name are found anywhere in the input folder
+  allow_duplicate_filenames_in_root: True
+
+  # Sometimes linked images that should be local (based on the path) cannot be found.
+  # Toggle this to False to disable warnings if that happens.
+  warn_on_skipped_image: True
+  warn_on_skipped_file: True
+
+  # This will skip emptying output folders, if you want to implement this yourself
+  no_clean: False
+
+  # Whether the markdown interpreter assumes relative path when no / at the beginning of a link
+  relative_path_md: True
+
+  # Whether the html paths will be relative.
+  # Note: This is only useful if you want to open the html locally on your machine without using a webserver
+  #  and is generally not advised. This will also disable all features that need a webserver to function
+  #  such as the graph view.
+  relative_path_html: False
+
+  # Whether external http anchor links should have a target of "_blank"
+  external_blank: False
+
+  # If alt text is specified, place it in a figure caption under the image.
+  img_alt_text_use_figure: True
+
+  # Will preserve inline tags. This will give polluted markdown output
+  preserve_inline_tags: True
+
+  # Will wrap inclusions with <div class="inclusion">{content}</div>
+  wrap_inclusions: False
+
+  features:
+    styling:
+      layout: documentation               # documentation, tabs, minimal
+      header_template: full               # <full, minimal> currently only supported for documentation layout
+      max_note_width: 120rem              # not supported for layout: tabs
+      add_toc: '<DEPRECATED>'                       # add "[TOC]" (Table of Contents) when missing
+      toc_pane: '<DEPRECATED>'                      # removes table of contents from the note and puts it in the right pane (not supported for layout:tabs)
+      flip_panes: '<DEPRECATED>'                   # switch right and left pane around. (does nothing unless in documentation layout.)
+      add_dir_list: True                  # show directory contents in one of the panes (only documentation layout)
+      accent_color: '65, 76, 253'
+      loading_bg_color: '22, 22, 22'
+
+    theme_picker:
+      enabled: True
+      styling:
+        show_icon: True
+
+    smiles:
+      enabled: False
+      theme: dark       # dark, light, oldschool, oldschool-dark, solarized, solarized-dark, matrix, github, carbon, cyberpunk, gruvbox, gruvbox-dark
+      width: "100%"       # XXX%, XXXpx, XXX 
+      height: "300px"     # XXX%, XXXpx, XXX
+
+    code_highlight:
+      enabled: True
+    mermaid_diagrams:
+      enabled: True
+      strip_special_chars: False
+    callouts:
+      enabled: True
+    math_latex:
+      enabled: True
+    backlinks:                  # Show backlinks at the bottom of each note
+      enabled: True
+    embedded_note_titles:
+      enabled: True
+      hide_on_h1: True          # don't add embedded title if the note starts with an h1
+
+    search:
+      enabled: True
+      add_files: True
+      try_preload: False        # on page refresh, if search_data is stored in localStorage, it will init search, instead of waiting for the search panel to be opened.
+      styling:
+        show_icon: True
+
+    embedded_search:
+      enabled: False
+
+    tags_page:
+      enabled: True
+      styling:
+        show_icon: True
+        show_in_note_footer: True
+
+    dataview:
+      enabled: False
+      folder: 'obs.html/export'       # relative to the vault being processed. this folder should always be in the vault
+
+    folder_notes:
+      enabled: False
+      placement: 'outside folder'     # 'inside folder' , 'outside folder'
+      naming: 'folder name'           # 'folder name', 'index', 'aurkibidea', 'etc'
+
+    eraser:
+      enabled: True
+
+    breadcrumbs:
+      enabled: False
+
+    # Include code to build the graph view per page
+    graph:
+      enabled: True                   # Include code to build the graph view per page (default: True)
+      templates:
+        - id: 2d
+          name: 2d
+          path: builtin<2d>
+        - id: 3d
+          name: 3d
+          path: builtin<3d>
+      styling:
+        show_icon: True
+      coalesce_force: '-30'
+      show_inclusions_in_graph: True
+
+    rss:
+      enabled: False
+      host_root: 'https://localhost:8000/'
+      styling:
+        show_icon: True
+      channel:
+        title: 'Notes'
+        website_link: '<https://your website.com>'
+        description: '<your description>'
+        language_code: 'en-us'
+        managing_editor: 'n/a'
+        web_master: 'n/a'
+      items:
+        selector:
+          match_keys: []
+          exclude_keys: []
+          include_subfolders: []
+          exclude_subfolders: ['.git','obs.html']
+          exclude_files: ['not_created.html', 'index.html']
+        description:
+          selectors:
+            - ['yaml','rss:description']
+            - ['first-paragraphs', 2, '<br/><br/>']
+            - ['first-header', 1]
+        title:
+          selectors:
+            - ['yaml','rss:title']
+            - ['first-header', 1]
+            - ['path', ['parent',1], '/', ['stem']]
+        publish_date:
+          selectors:
+            - ['yaml','rss:publish_date']
+            - ['yaml_strip','tags',['date/']]
+          iso_formatted: True
+          format_string: '' #'%Y-%m-%d'
+          default_value: ''
+
+    create_index_from_dir_structure:
+      enabled: True
+      verbose: False
+      rel_output_path: 'obs.html/dir_index.html'
+      styling:
+        show_icon: True
+      exclude_subfolders:
+        - ".git"
+        - "__src"
+        - "md"
+        - "obs.html"
+      exclude_files:
+        - ".gitignore"
+        - "favicon.ico"
+        - "not_created.html"
+      homepage_label: "index"
+
+    # Create a markdown file with links to notes that have one of the given tags.
+    create_index_from_tags:
+      enabled: False
+      verbose: False
+      rel_output_path: 'obs.html/tag_index.md'
+      homepage_label: "index"
+      use_as_homepage: False
+      add_links_in_graph_tree: True
+      tags: []
+      match_on_inline_tags: False
+      styling:
+        include_folder_in_link: False
+      sort:
+        method: 'none'          # <key_value, creation_time, modified_time, none>    ! created_time not available on Linux!
+        key_path: ''            # empty for top level, use ':' to go down multiple levels
+        value_prefix: ''        # in case of multiple values under key_path, match on this prefix, and then remove prefix
+        reverse: false          # false/true reverses output
+        none_on_bottom: true    # will put notes at the bottom that do not have the sort key, otherwise at the top
+      exclude_paths:            # don't included these paths in the dir list
+       - ".gitignore"
+
+    table_of_contents:
+      add_toc_when_missing: False          # add "[TOC]" (Table of Contents) when missing
+      only_show_for_multiple_headers: True # if there is only one header, don't show the TOC
+
+    side_pane:              # only valid for documentation layout
+      left_pane:
+        enabled: True
+        close_if_empty: False
+        width: 20rem
+        contents: dir_tree  # <toc, tag_tree, dir_tree, html_page> relevant features should be enabled and configured see docs
+        content_args:       
+          rel_path: 'index.html'    # used for html_page
+          div_selector: '.content'  # used for html_page
+          strip_sub_divs:           # used for html_page
+            - '.toc'
+          strip_tags: []            # used for tag_tree
+            
+      right_pane:
+        enabled: True
+        close_if_empty: True
+        width: 16rem
+        contents: toc       # <toc, tag_tree, dir_tree, html_page> relevant features should be enabled and configured see docs
+        content_args:       # used for html_page
+          rel_path: 'index.html'
+          div_selector: '.content'
+          strip_sub_divs:
+            - '.toc'
+
+    footnote_md_extension:
+      enabled: True
+
+    post_processing: []
+    # post_processing:
+    #   - module: md_markdown_callouts
\ No newline at end of file
diff --git a/output/mod/arguments.yml b/output/mod/arguments.yml
new file mode 100644
index 0000000..ae0f85c
--- /dev/null
+++ b/output/mod/arguments.yml
@@ -0,0 +1,4 @@
+command:
+- convert
+config_path: config.yml
+literals: {}
diff --git a/output/mod/capabilities.json b/output/mod/capabilities.json
new file mode 100644
index 0000000..be7d8a4
--- /dev/null
+++ b/output/mod/capabilities.json
@@ -0,0 +1,6 @@
+{
+  "directory_tree": true,
+  "search_data": true,
+  "graph_data": true,
+  "embedded_note_titles": true
+}
\ No newline at end of file
diff --git a/output/mod/config.yml b/output/mod/config.yml
new file mode 100644
index 0000000..941277a
--- /dev/null
+++ b/output/mod/config.yml
@@ -0,0 +1,328 @@
+_css_file: main_documentation.css
+audio_format_suffixes:
+- mp3
+- webm
+- wav
+- m4a
+- ogg
+- 3gp
+- flac
+copy_output_file_method: default
+copy_vault_to_tempdir: true
+copy_vault_to_tempdir_follow_copy: false
+copy_vault_to_tempdir_method: default
+embeddable_file_suffixes:
+- pdf
+exclude_glob:
+- /.obsidian
+- /.trash
+- /.DS_Store
+- /.git
+exclude_subfolders: <DEPRECATED>
+file_exports: []
+html_custom_footer_inclusions: []
+html_custom_inclusions: []
+html_output_folder_path_str: output/html
+html_template_path_str: ''
+html_url_prefix: ''
+included_file_suffixes:
+- jpg
+- jpeg
+- gif
+- png
+- bmp
+- svg
+- mp4
+- webm
+- ogv
+- mov
+- mkv
+- mp3
+- wav
+- m4a
+- ogg
+- 3gp
+- flac
+- pdf
+included_folders: []
+keep_module_file_versions: false
+max_note_depth: -1
+md_entrypoint_path_str: output/md/index.md
+md_folder_path_str: output/md
+md_source_host_urls: []
+meta_modules_post:
+- name: resource_logger
+  persistent: true
+module_config:
+  get_file_list:
+    exclude_glob:
+      value:
+      - .obsidian/**/*
+      - .trash/**/*
+      - .DS_Store/**/*
+      - .git/**/*
+    include_glob:
+      value: '*'
+module_data_folder: output/mod
+module_list:
+  convert_markdown_to_html: []
+  convert_note_to_markdown: []
+  finalize:
+  - description:
+    - Creates the log of which module resources were accessed by which module
+    - Requires persistent meta_module of the same name to work!
+    method: finalize
+    name: resource_logger
+    persistent: true
+  preparation:
+  - description: Merges the user config with default config and runs checks.
+    name: process_config
+  - description: Determine all paths of interest based on input.
+    name: load_paths
+  - description: Fills in auto values that can be read from the vault config.
+    name: process_config_auto
+  - description: Prepare and export templates used to create html output.
+    name: html_templater
+    persistent: true
+  - name: load_graphers
+    persistent: true
+  - description:
+    - Basic file listing based on include_folder/exclude_glob combination
+    - Further filtering can be done in further modules
+    name: get_file_list
+  - description:
+    - Gets the metadata of each markdown file, and stores it under metadata/<rel_filepath>.json
+    name: parse_metadata
+  - description:
+    - Filter out markdown files that do not comply to certain metadata requirements
+    name: filter_on_metadata
+  - description:
+    - Copy vault to temporary directory, so that we can edit the obsidian notes themselves
+      safely.
+    - Must be persistent!
+    name: copy_vault_to_tempdirectory
+    persistent: true
+  - description:
+    - Ensures the output folders are created
+    - Optionally removes previous output if it exists in the target directories
+    name: prepare_output_folders
+navbar_links: []
+obsidian_entrypoint_path_str: ./
+obsidian_folder_path_str: <DEPRECATED>
+resolve_output_file_links: true
+site_name: Obsidian-Html/Notes
+toggles:
+  allow_duplicate_filenames_in_root: true
+  compile_html: true
+  compile_md: true
+  debug_filetree_keys: false
+  external_blank: false
+  features:
+    backlinks:
+      enabled: true
+    breadcrumbs:
+      enabled: false
+    callouts:
+      enabled: true
+    code_highlight:
+      enabled: true
+    create_index_from_dir_structure:
+      enabled: true
+      exclude_files:
+      - .gitignore
+      - favicon.ico
+      - not_created.html
+      exclude_subfolders:
+      - .git
+      - __src
+      - md
+      - obs.html
+      homepage_label: index
+      rel_output_path: obs.html/dir_index.html
+      styling:
+        show_icon: true
+      verbose: false
+    create_index_from_tags:
+      add_links_in_graph_tree: true
+      enabled: false
+      exclude_paths:
+      - .gitignore
+      homepage_label: index
+      match_on_inline_tags: false
+      rel_output_path: obs.html/tag_index.md
+      sort:
+        key_path: ''
+        method: none
+        none_on_bottom: true
+        reverse: false
+        value_prefix: ''
+      styling:
+        include_folder_in_link: false
+      tags: []
+      use_as_homepage: false
+      verbose: false
+    dataview:
+      enabled: false
+      folder: obs.html/export
+    embedded_note_titles:
+      enabled: true
+      hide_on_h1: true
+    embedded_search:
+      enabled: false
+    eraser:
+      enabled: true
+    folder_notes:
+      enabled: false
+      naming: folder name
+      placement: outside folder
+    footnote_md_extension:
+      enabled: true
+    graph:
+      coalesce_force: '-30'
+      enabled: true
+      show_inclusions_in_graph: true
+      styling:
+        show_icon: true
+      templates:
+      - id: 2d
+        name: 2d
+        path: builtin<2d>
+      - id: 3d
+        name: 3d
+        path: builtin<3d>
+    math_latex:
+      enabled: true
+    mermaid_diagrams:
+      enabled: true
+      strip_special_chars: false
+    post_processing: []
+    rss:
+      channel:
+        description: <your description>
+        language_code: en-us
+        managing_editor: n/a
+        title: Notes
+        web_master: n/a
+        website_link: <https://your website.com>
+      enabled: false
+      host_root: https://localhost:8000/
+      items:
+        description:
+          selectors:
+          - - yaml
+            - rss:description
+          - - first-paragraphs
+            - 2
+            - <br/><br/>
+          - - first-header
+            - 1
+        publish_date:
+          default_value: ''
+          format_string: ''
+          iso_formatted: true
+          selectors:
+          - - yaml
+            - rss:publish_date
+          - - yaml_strip
+            - tags
+            - - date/
+        selector:
+          exclude_files:
+          - not_created.html
+          - index.html
+          exclude_keys: []
+          exclude_subfolders:
+          - .git
+          - obs.html
+          include_subfolders: []
+          match_keys: []
+        title:
+          selectors:
+          - - yaml
+            - rss:title
+          - - first-header
+            - 1
+          - - path
+            - - parent
+              - 1
+            - /
+            - - stem
+      styling:
+        show_icon: true
+    search:
+      add_files: true
+      enabled: true
+      styling:
+        show_icon: true
+      try_preload: false
+    side_pane:
+      left_pane:
+        close_if_empty: false
+        content_args:
+          div_selector: .content
+          rel_path: index.html
+          strip_sub_divs:
+          - .toc
+          strip_tags: []
+        contents: dir_tree
+        enabled: true
+        width: 20rem
+      right_pane:
+        close_if_empty: true
+        content_args:
+          div_selector: .content
+          rel_path: index.html
+          strip_sub_divs:
+          - .toc
+        contents: toc
+        enabled: true
+        width: 16rem
+    smiles:
+      enabled: false
+      height: 300px
+      theme: dark
+      width: 100%
+    styling:
+      accent_color: 65, 76, 253
+      add_dir_list: true
+      add_toc: <DEPRECATED>
+      flip_panes: <DEPRECATED>
+      header_template: full
+      layout: documentation
+      loading_bg_color: 22, 22, 22
+      max_note_width: 120rem
+      toc_pane: <DEPRECATED>
+    table_of_contents:
+      add_toc_when_missing: false
+      only_show_for_multiple_headers: true
+    tags_page:
+      enabled: true
+      styling:
+        show_icon: true
+        show_in_note_footer: true
+    theme_picker:
+      enabled: true
+      styling:
+        show_icon: true
+  force_filename_to_lowercase: true
+  img_alt_text_use_figure: true
+  no_clean: false
+  no_tabs: true
+  preserve_inline_tags: true
+  process_all: false
+  relative_path_html: false
+  relative_path_md: true
+  slugify_html_links: false
+  stdout_current_file: false
+  strict_line_breaks: false
+  verbose_printout: false
+  warn_on_skipped_file: true
+  warn_on_skipped_image: true
+  wrap_inclusions: false
+verbosity: info
+video_format_suffixes:
+- mp4
+- webm
+- ogv
+- mov
+- mkv
diff --git a/output/mod/graphers.json b/output/mod/graphers.json
new file mode 100644
index 0000000..922c6a7
--- /dev/null
+++ b/output/mod/graphers.json
@@ -0,0 +1,14 @@
+[
+  {
+    "id": "2d",
+    "name": "2d",
+    "path": "builtin<2d>",
+    "contents": "// This function is called by obshtml when it wants to open the graph\nfunction run(args) {\n    if (window.ObsHtmlGraph.graph_dependencies_loaded['2d'] == false){\n        // load three dependencies in succession and then run initGraph(args)\n        load_script_on_demand(\n            '//unpkg.com/force-graph', load_script_on_demand, [\"//unpkg.com/d3-force\", load_script_on_demand, [\"https://d3js.org/d3.v4.min.js\", initGraph, [args]]]\n        )\n        // tell obshtml that the dependencies have been loaded\n        window.ObsHtmlGraph.graph_dependencies_loaded['2d'] = true;\n\n    }\n    else {\n        // just run directly\n        initGraph(args)\n    }\n}\n\nfunction initGraph(args) {\n    // open div right before loading the graph to avoid opening an empty div\n    args.graph_container.style.display = \"block\";\n\n    // Load data then start graph\n    fetch(args.data).then(res => res.json()).then(data => {\n\n        // overwrites\n        let g = window.ObsHtmlGraph.graphs[args.uid];\n        g.actions['select_node'] = function(args, graph){\n            return graph_select_node(args, graph)\n        }\n\n        g.graph = ForceGraph()\n            (args.graph_container)\n            .graphData(data)\n            .width(args.width)\n            .maxZoom(10)\n            .height(args.height)\n            .backgroundColor(g.colors.bg)\n            .nodeLabel('name')\n            .d3Force(\"charge\", d3.forceManyBody().strength(args.coalesce_force))\n            .nodeColor((node) => {return g.colors.node_inactive})\n            .nodeCanvasObjectMode(() => 'after')\n            .nodeCanvasObject((node, ctx, globalScale) => {\n                // draw text only for nodes connected to the current node\n                let isConnected = false;\n                node.links.forEach(link => {\n                    if (link == g.current_node_id){\n                        isConnected = true;\n                    }\n                })\n                // draw text\n                if (isConnected){\n                    const label = node.name;\n                    const fontSize = 11 / globalScale;\n                    ctx.font = `${fontSize}px Sans-Serif`;\n                    const textWidth = ctx.measureText(label).width;                \n                    ctx.textAlign = 'center';\n                    ctx.textBaseline = 'middle';\n                    ctx.fillStyle = g.colors.text;\n                    ctx.fillText(label, node.x, node.y+8);\n                }\n                \n                // color only main node & semiconnected\n                if (node.id != g.current_node_id){\n                    if (isConnected){\n                        ctx.beginPath();\n                        ctx.arc(node.x, node.y, 4, 0, 2 * Math.PI);\n                        ctx.fillStyle = g.colors.node_semiactive;\n                        ctx.fill();\n                    }\n                    return\n                }\n\n                // color node\n                ctx.beginPath();\n                ctx.arc(node.x, node.y, 4+1, 0, 2 * Math.PI);\n                ctx.fillStyle = g.colors.node_active_border;\n                ctx.fill();\n                ctx.beginPath();\n                ctx.arc(node.x, node.y, 4, 0, 2 * Math.PI);\n                ctx.fillStyle = g.colors.node_active;\n                ctx.fill();\n\n            })\n            .linkColor(link => {\n                if (link.source.id == g.current_node_id){\n                    return g.colors.link_active\n                }\n                if (link.target.id == g.current_node_id){\n                    return g.colors.link_active\n                }\n                return g.colors.link_inactive\n            })\n            .linkDirectionalParticles(\"value\")\n            .linkDirectionalParticleSpeed(0.010)\n            .linkDirectionalParticleWidth(link => {\n                if (link.source.id == g.current_node_id || link.target.id == g.current_node_id){\n                    return 4.0\n                }\n                return 0\n            })\n            // [425] Add included references as links in graph view\n            .linkLineDash(link => {\n                if (link.type == 'inclusion'){\n                    return [1,1]\n                }\n                return false;\n            })\n            .onNodeClick(node => {\n                args.node = node;\n                g.actions['left_click'](args)\n            })\n            .onNodeRightClick(node => {\n                args.node = node;\n                g.current_node_id = node.id\n                g.actions['right_click'](args)\n            })\n        \n        setTimeout( () => g.graph.zoomToFit(1000, rem(3), function(n){return initGraphDone(n, args)}), 1000 );\n    });\n}\n\nfunction initGraphDone(n, args){\n    // show help text\n    let button = document.getElementById('B'+args['uid'])\n    if (button.innerHTML == 'Hide Graph'){\n        document.getElementById('D'+args['uid']).classList.add('fadein');\n    }\n    else {\n        document.getElementById('D'+args['uid']).classList.remove('fadein');\n    } \n\n    // zoom toward current node\n    zoom_select(n, args)\n}\n\n// HELPER FUNCTIONS\n/////////////////////////////////////////////////////////////////////////////////////\n\nfunction graph_select_node(args){\n    let g = window.ObsHtmlGraph.graphs[args.uid];\n    g.current_node_id = args.node.id;\n\n    g.graph.zoomToFit(1000, rem(3), function(n){return zoom_select(n, args)})\n    return false;\n}\n\nfunction zoom_select(n, args){\n    let g = window.ObsHtmlGraph.graphs[args.uid];\n    if (g == undefined){ // graph closed before settimeout got around to zooming\n        return false\n    }\n\n    if (n.id == g.current_node_id){\n        return true\n    }\n    for (let i=0;i<n.links.length;i++){\n        if (n.links[i] == g.current_node_id){\n            return true\n        }\n    }\n    return false\n}\n\n/////////////////////////////////////////////////////////////////////////////////////\n\n// export the run() method so that it can be called by obshtml\nexport { \n    run\n};"
+  },
+  {
+    "id": "3d",
+    "name": "3d",
+    "path": "builtin<3d>",
+    "contents": "function run(args) {\n    function start(){\n        args.graph_container.style.display = \"block\";       // open div right before loading the graph to avoid opening an empty div\n        initGraph_3d(args)\n        window.ObsHtmlGraph.graph_dependencies_loaded['3d'] = true;\n    }\n\n    if (window.ObsHtmlGraph.graph_dependencies_loaded['3d'] == false){\n        load_script_on_demand(\n            CONFIGURED_HTML_URL_PREFIX + '/obs.html/static/3d-force-graph.js', \n            start,\n            []\n        )\n    }\n    else {\n        start();\n    }\n}\n\nfunction initGraph_3d(args) {\n    let g = window.ObsHtmlGraph.graphs[args.uid];\n    g.graph = ForceGraph3D()\n        (args.graph_container)\n        .jsonUrl(args.data)\n        .width(args.width)\n        .height(args.height)\n        .nodeLabel('name')\n        .linkDirectionalParticles(\"value\")\n        .linkDirectionalParticleSpeed(0.010)\n        .linkDirectionalParticleWidth(2.0)\n        .nodeColor(node => {\n            if (node.id == g.current_node_id){\n                return '#ff0000'\n            }\n            let isConnected = false;\n            node.links.forEach(link => {\n                if (link == g.current_node_id){\n                    isConnected = true;\n                }\n            })\n            if (isConnected){\n                return '#f7be49';\n            }\n            return '#ffffff'\n        })\n        .linkColor(link => {\n            if (link.source == g.current_node_id || link.target == g.current_node_id){\n                return '#ff0000'\n            }\n            return '#dadada'\n        })\n        .linkOpacity(0.3)\n        .onNodeClick(node => {\n            args.node = node;\n            g.actions['left_click'](args)\n        })\n        .onNodeRightClick(node => {\n            args.node = node;\n            g.actions['right_click'](args, g.graph)\n        });\n}\n\n\nexport { \n    run\n};"
+  }
+]
\ No newline at end of file
diff --git a/output/mod/guid.txt b/output/mod/guid.txt
new file mode 100644
index 0000000..3d91caf
--- /dev/null
+++ b/output/mod/guid.txt
@@ -0,0 +1 @@
+3cd6efe0-8d37-4c4b-8e21-d5e5906014c0
\ No newline at end of file
diff --git a/output/mod/html/dynamic_footer_inclusions.html b/output/mod/html/dynamic_footer_inclusions.html
new file mode 100644
index 0000000..8b13789
--- /dev/null
+++ b/output/mod/html/dynamic_footer_inclusions.html
@@ -0,0 +1 @@
+
diff --git a/output/mod/html/dynamic_inclusions.html b/output/mod/html/dynamic_inclusions.html
new file mode 100644
index 0000000..8b13789
--- /dev/null
+++ b/output/mod/html/dynamic_inclusions.html
@@ -0,0 +1 @@
+
diff --git a/output/mod/html/graph.template.html b/output/mod/html/graph.template.html
new file mode 100644
index 0000000..992d2f2
--- /dev/null
+++ b/output/mod/html/graph.template.html
@@ -0,0 +1,26 @@
+<div class="graph requires_js {graph_classes}">
+    <div id="A{id}{level}" class="graph_div"></div>
+
+    <div class="graph-instructions" id="D{id}{level}">
+        Left-click: follow link, Right-click: select node, Scroll: zoom
+    </div>
+    
+    <div class="graph-button-row" style="display:flex;">
+        <button class="graph_button graph_show_button" id="B{id}{level}" level="{level}" note_temp_id="{id}" onclick="window.ObsHtmlGraph.run(this, '{id}', '{pinnedNode}');">
+            Show Graph
+        </button>
+        <button class="graph_button graph_type_button" id="C{id}{level}" style="flex:1" onclick="window.ObsHtmlGraph.switch_graph_type(this);">
+            2D
+        </button>
+    </div>
+</div>
+
+<script type="module">
+    if (window.ObsHtmlGraph == undefined){
+        import('{html_url_prefix}/obs.html/static/graph.js').then((Module) => {
+            window.ObsHtmlGraph = Module;
+            window.ObsHtmlGraph.arm_page(document.getElementById('page_holder'))
+        })
+    }
+</script>
+
diff --git a/output/mod/html/graph_full_page.template.html b/output/mod/html/graph_full_page.template.html
new file mode 100644
index 0000000..f842a31
--- /dev/null
+++ b/output/mod/html/graph_full_page.template.html
@@ -0,0 +1,114 @@
+<!DOCTYPE html>
+
+<html lang="en">
+
+        <head>
+                <!-- Page information -->
+                <meta charset="UTF-8" />
+                <meta name="node_id" content="{node_id}">
+                <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+                <link rel="shortcut icon" href="{html_url_prefix}/favicon.ico" />
+
+                <!-- Set title -->
+                <title>{title}</title>
+
+                <!-- Includes -->
+                {dynamic_includes}
+
+                <!-- Onload tweaks -->
+                <script>
+                        const CURRENT_NODE = '{pinnedNode}';
+                        const HTML_URL_PREFIX = '{html_url_prefix}';
+                        const PAGE_DEPTH = {page_depth};
+                        const CONFIGURED_HTML_URL_PREFIX = '{configured_html_url_prefix}';
+                </script>
+        </head>
+
+<body class="theme-obs-light">
+    <div id="antiflash" style="display: none;"></div>
+    <script>
+            document.getElementById('antiflash').style.display = 'block';
+    </script>
+    {search_html}
+
+    <div id="page_holder" class="flex_col">
+            <div id="header" class="header">
+                    <div id="header_flex" class="flex_row">
+                            <a href="{html_url_prefix}/index.html" id="homelink" title="Clear screen and go to homepage">{title}</a>
+                            <div class="navbar-button" onclick="toggle_menu()">
+                                    ≡
+                            </div>
+                            <div id="navbar" class="navbar">
+                                {{navbar_links}}
+                                <div class="icon-tray">
+                                    {theme_button}
+                                    {search_button}
+                                    {graph_button}
+                                    {dirtree_button}
+                                    {tags_page_button}
+                                    {rss_button}
+                                </div>
+                            </div>
+                    </div>
+                    {theme_popup}
+            </div>
+            
+            <div class="graph_full_page">
+                <div class="graph-button-row" style="display:flex;">
+                    <button class="graph_button graph_show_button" id="Bgraph_full_page" level="" note_temp_id="graph_full_page" style="visibility: hidden; margin:0px">
+                        Show Graph
+                    </button>
+                    <button class="graph_button graph_type_button" id="Cgraph_full_page" style="flex:1; margin:0px; margin-right:0.2rem;" onclick="window.ObsHtmlGraph.switch_graph_type(this);">
+                        2D
+                    </button>
+                </div>
+                    <div id="Agraph_full_page" class="graph_div_full"></div>
+                    <div class="graph-instructions fadein" id="Dgraph_full_page">
+                        Left-click: follow link, Right-click: select node, Scroll: zoom
+                    </div>
+            </div>
+                        
+            
+
+    </div>
+    
+    <script type="module">
+        document.addEventListener('DOMContentLoaded', load_fullpage_graph);
+
+        function load_fullpage_graph(){
+
+            // set graph_type button correctly
+            let type_d = ls_get('graph_type_d');
+            if (!type_d){
+                ls_set('graph_type_d', '2D');
+                type_d = '2D';
+            }
+            document.getElementById('Cgraph_full_page').innerHTML = type_d;
+            
+            import('{html_url_prefix}/obs.html/static/graph.js').then((Module) => {
+                window.ObsHtmlGraph = Module;
+                window.ObsHtmlGraph.arm_page(document.getElementById('page_holder'))
+
+                // overwrites
+                window.ObsHtmlGraph.default_actions['open_link'] = function (args){
+                    console.log('hi openlink')
+                    return window.ObsHtmlGraph.graph_open_link_normal(args)()
+                }
+
+
+                // Get node id from the page where we clicked on the icon for the fullpage graph
+                const urlParams = new URLSearchParams(window.location.search);
+                const pinnedNode = urlParams.get('node');
+
+                // Immediately run graph instead of waiting for button click
+                window.ObsHtmlGraph.run(document.getElementById('Bgraph_full_page'), 'graph_full_page', pinnedNode);
+            })
+        }
+    </script>
+
+{footer_js_inclusions}
+{dynamic_footer_includes}
+
+
+</body>
+</html>
diff --git a/output/mod/html/note.template.html b/output/mod/html/note.template.html
new file mode 100644
index 0000000..fc9b176
--- /dev/null
+++ b/output/mod/html/note.template.html
@@ -0,0 +1,171 @@
+<!DOCTYPE html>
+
+<html lang="en">
+
+        <head>
+                <!-- Page information -->
+                <meta charset="UTF-8" />
+                <meta name="node_id" content="{node_id}">
+                <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+                <link rel="shortcut icon" href="{html_url_prefix}/favicon.ico" />
+
+                <!-- Set title -->
+                <title>{title}</title>
+
+                <!-- Includes -->
+                {dynamic_includes}
+
+                <!-- Onload tweaks -->
+                <script>
+                        const CURRENT_NODE = '{pinnedNode}';
+                        const HTML_URL_PREFIX = '{html_url_prefix}';
+                        const PAGE_DEPTH = {page_depth};
+                </script>
+        </head>
+
+<body class="theme-obs-light">
+        <div id="antiflash" style="display: none;"></div>
+        <script>
+                document.getElementById('antiflash').style.display = 'block';
+        </script>
+        {search_html}
+
+        <div id="page_holder" class="flex_col">
+                {header}
+                <div class="flex_row">
+                        {left_pane}
+                        <div class="container">
+                                {content}
+                                <!-- end content -->
+                        </div>
+                        <div class="container_filler">
+                        </div>
+                        {right_pane}
+                </div>
+        </div>
+
+        <script>
+                function handle_toggle_side_bar(e){
+                        let header;
+                        let pane; 
+                        let target = e.target
+
+                        // switch out the navbar button click for a header click
+                        if (target.id == 'left_pane_toggle_nav'){
+                                target = document.getElementById('left_pane_fold_header')
+                        }
+                        else if (target.id == 'right_pane_toggle_nav'){
+                                target = document.getElementById('right_pane_fold_header')
+                        }
+
+                        // get header and pane
+                        if (target.classList.contains('fold_header')) {
+                                header = target;
+                                pane = target.parentElement;
+                        }
+                        else {
+                                pane = target;
+                                header = target.getElementsByClassName('fold_header')[0];
+                        }
+                        toggle_side_bar(pane, header, true)
+                        e.stopPropagation();
+                }
+                function handle_toggle_side_bar_button(e){
+                        document.getElementById('menu_toggle_button').click()
+                        handle_toggle_side_bar(e);
+                }
+
+                function toggle_side_bar(pane, header, save) {
+                        let active = (pane.classList.contains('active'))
+                        if (active){
+                                disable_side_bar(pane, header, save);
+                        }
+                        else {
+                                enable_side_bar(pane, header, save);
+                        }
+                }
+                function enable_side_bar(pane, header, save){
+                        pane.classList.add('active');
+                        pane.removeEventListener('click', handle_toggle_side_bar);
+                        header.addEventListener('click', handle_toggle_side_bar);
+                        set_correct_header_symbol(header);
+                        if (save){ save_panel_folding_state(header, true) }
+                }
+                function disable_side_bar(pane, header, save){
+                        pane.classList.remove('active');
+                        pane.addEventListener('click', handle_toggle_side_bar);
+                        header.removeEventListener('click', handle_toggle_side_bar);
+                        set_correct_header_symbol(header);
+                        if (save){ save_panel_folding_state(header, false) }
+                }
+                function set_correct_header_symbol(header){
+                        let pane = header.parentElement;
+                        let symbol = [['>', '<'],['<', '>']]
+                        symbol = symbol[Number(header.classList.contains('right_pane_fold_header'))][Number(pane.classList.contains('active'))];
+                        console.log(symbol);
+                        header.innerHTML = symbol
+                        return header;
+                }
+                function panel_folding_get_panel_name(header){
+                        return ['left', 'right'][Number(header.classList.contains('right_pane_fold_header'))]
+                }
+                function save_panel_folding_state(header, active){
+                        ls_set('pane_folding_state_'+panel_folding_get_panel_name(header), Number(active));
+                }
+                function load_panel_folding_state(panel_name){
+                        val = ls_get('pane_folding_state_'+panel_name)
+                        if (!val){ return {'exists': false, 'value': null}}
+                        return {'exists': true, 'value': Boolean(Number(val))}
+                }
+                function set_pane_folding_start(left_header, right_header){
+                        // small screen = closed
+                        let right_pane_enabled = true;
+                        let left_pane_enabled = true;
+                        let w = window.visualViewport.width
+                        if (w < 1000){
+                                left_pane_enabled = false
+                        }
+                        if (w < 800){
+                                right_pane_enabled = false
+                        }
+
+                        // get saved values if present
+                        let rval = load_panel_folding_state('right')
+                        if (rval['exists']){
+                                right_pane_enabled = rval['value']
+                        }
+                        let lval = load_panel_folding_state('left')
+                        if (lval['exists']){
+                                left_pane_enabled = lval['value']
+                        }
+
+                        // default = enabled, so we only need to disable
+                        if (!left_pane_enabled){
+                                disable_side_bar(document.getElementById('left_pane'), document.getElementById('left_pane_fold_header'))
+                        }
+                        if (!right_pane_enabled){
+                                disable_side_bar(document.getElementById('right_pane'), document.getElementById('right_pane_fold_header'))
+                        }
+                }
+
+                function init_pane_folding(header){
+                        set_correct_header_symbol(header);
+                        header.addEventListener('click', handle_toggle_side_bar);
+                }
+                
+                
+                set_pane_folding_start()
+                init_pane_folding(document.getElementById('left_pane_fold_header'));
+                init_pane_folding(document.getElementById('right_pane_fold_header'));
+
+                document.getElementById('left_pane_toggle_nav').addEventListener('click', handle_toggle_side_bar_button);
+                document.getElementById('right_pane_toggle_nav').addEventListener('click', handle_toggle_side_bar_button);
+        </script>
+
+        {footer_js_inclusions}
+        {dynamic_footer_includes}
+
+
+
+</body>
+</html>
diff --git a/output/mod/modfile_dependencies.json b/output/mod/modfile_dependencies.json
new file mode 100644
index 0000000..80fe31f
--- /dev/null
+++ b/output/mod/modfile_dependencies.json
@@ -0,0 +1,174 @@
+{
+  "log.resources": {
+    "provided_by": [
+      "resource_logger (ResourceLoggerMetaModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "config.yml": {
+    "provided_by": [
+      "setup_module (SetupModule)"
+    ],
+    "required_by": [
+      "resource_logger (ResourceLoggerMetaModule)",
+      "process_config (ProcessConfigModule)",
+      "load_paths (LoadPathsModule)",
+      "process_config_auto (ProcessConfigAutoModule)",
+      "html_templater (HtmlTemplaterModule)",
+      "load_graphers (LoadGrapherModule)",
+      "get_file_list (GetFileListModule)",
+      "copy_vault_to_tempdirectory (VaultCopyModule)",
+      "prepare_output_folders (PrepareOutputFoldersModule)"
+    ],
+    "altered_by": [
+      "process_config (ProcessConfigModule)",
+      "process_config_auto (ProcessConfigAutoModule)"
+    ]
+  },
+  "capabilities.json": {
+    "provided_by": [
+      "process_config (ProcessConfigModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "arguments.yml": {
+    "provided_by": [
+      "setup_module (SetupModule)"
+    ],
+    "required_by": [
+      "process_config (ProcessConfigModule)"
+    ],
+    "altered_by": []
+  },
+  "paths.json": {
+    "provided_by": [
+      "load_paths (LoadPathsModule)"
+    ],
+    "required_by": [
+      "process_config_auto (ProcessConfigAutoModule)",
+      "get_file_list (GetFileListModule)",
+      "parse_metadata (ParseMetadataModule)",
+      "filter_on_metadata (FilterOnMetadataModule)",
+      "copy_vault_to_tempdirectory (VaultCopyModule)",
+      "prepare_output_folders (PrepareOutputFoldersModule)"
+    ],
+    "altered_by": [
+      "copy_vault_to_tempdirectory (VaultCopyModule)"
+    ]
+  },
+  "html/note.template.html": {
+    "provided_by": [
+      "html_templater (HtmlTemplaterModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "html/dynamic_inclusions.html": {
+    "provided_by": [
+      "html_templater (HtmlTemplaterModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "html/dynamic_footer_inclusions.html": {
+    "provided_by": [
+      "html_templater (HtmlTemplaterModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "html/graph.template.html": {
+    "provided_by": [
+      "load_graphers (LoadGrapherModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "html/graph_full_page.template.html": {
+    "provided_by": [
+      "load_graphers (LoadGrapherModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "graphers.json": {
+    "provided_by": [
+      "load_graphers (LoadGrapherModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "index/files.json": {
+    "provided_by": [
+      "get_file_list (GetFileListModule)"
+    ],
+    "required_by": [
+      "filter_on_metadata (FilterOnMetadataModule)",
+      "copy_vault_to_tempdirectory (VaultCopyModule)"
+    ],
+    "altered_by": [
+      "filter_on_metadata (FilterOnMetadataModule)",
+      "copy_vault_to_tempdirectory (VaultCopyModule)"
+    ]
+  },
+  "index/excluded_files.json": {
+    "provided_by": [
+      "get_file_list (GetFileListModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "index/markdown_files.json": {
+    "provided_by": [
+      "get_file_list (GetFileListModule)"
+    ],
+    "required_by": [
+      "parse_metadata (ParseMetadataModule)",
+      "filter_on_metadata (FilterOnMetadataModule)"
+    ],
+    "altered_by": [
+      "filter_on_metadata (FilterOnMetadataModule)"
+    ]
+  },
+  "index/metadata.json": {
+    "provided_by": [
+      "parse_metadata (ParseMetadataModule)"
+    ],
+    "required_by": [
+      "filter_on_metadata (FilterOnMetadataModule)"
+    ],
+    "altered_by": []
+  },
+  "excluded_files_by_metadata.json": {
+    "provided_by": [
+      "filter_on_metadata (FilterOnMetadataModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "guid.txt": {
+    "provided_by": [
+      "setup_module (SetupModule)"
+    ],
+    "required_by": [
+      "prepare_output_folders (PrepareOutputFoldersModule)"
+    ],
+    "altered_by": []
+  },
+  "user_config.yml": {
+    "provided_by": [
+      "setup_module (SetupModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  },
+  "modfile_dependencies.json": {
+    "provided_by": [
+      "setup_module (SetupModule)"
+    ],
+    "required_by": [],
+    "altered_by": []
+  }
+}
\ No newline at end of file
diff --git a/output/mod/paths.json b/output/mod/paths.json
new file mode 100644
index 0000000..e51c228
--- /dev/null
+++ b/output/mod/paths.json
@@ -0,0 +1,16 @@
+{
+  "obsidian_folder": "C:/Users/jackb/Documents/obsidian/jack",
+  "md_folder": "C:/Users/jackb/Documents/obsidian/jack/output/md",
+  "obsidian_entrypoint": "C:/Users/jackb/Documents/obsidian/jack",
+  "md_entrypoint": "C:/Users/jackb/Documents/obsidian/jack/output/md/index.md",
+  "html_output_folder": "C:/Users/jackb/Documents/obsidian/jack/output/html",
+  "appdir": "C:/Users/jackb/AppData/Local/obsidianhtml/obsidianhtml",
+  "original_obsidian_folder": "C:/Users/jackb/Documents/obsidian/jack",
+  "original_obsidian_entrypoint": "C:/Users/jackb/Documents/obsidian/jack",
+  "dataview_export_folder": "C:/Users/jackb/Documents/obsidian/jack/obs.html/export",
+  "rel_obsidian_entrypoint": ".",
+  "rel_md_entrypoint_path": "index.md",
+  "input_folder": "C:/Users/jackb/Documents/obsidian/jack",
+  "entrypoint": "C:/Users/jackb/Documents/obsidian/jack",
+  "original_input_folder": "C:/Users/jackb/Documents/obsidian/jack"
+}
\ No newline at end of file
diff --git a/output/mod/user_config.yml b/output/mod/user_config.yml
new file mode 100644
index 0000000..d770499
--- /dev/null
+++ b/output/mod/user_config.yml
@@ -0,0 +1,325 @@
+audio_format_suffixes:
+- mp3
+- webm
+- wav
+- m4a
+- ogg
+- 3gp
+- flac
+copy_output_file_method: default
+copy_vault_to_tempdir: true
+copy_vault_to_tempdir_follow_copy: false
+copy_vault_to_tempdir_method: default
+embeddable_file_suffixes:
+- pdf
+exclude_glob:
+- /.obsidian
+- /.trash
+- /.DS_Store
+- /.git
+exclude_subfolders: <DEPRECATED>
+file_exports: []
+html_custom_footer_inclusions: []
+html_custom_inclusions: []
+html_output_folder_path_str: output/html
+html_template_path_str: ''
+html_url_prefix: ''
+included_file_suffixes:
+- jpg
+- jpeg
+- gif
+- png
+- bmp
+- svg
+- mp4
+- webm
+- ogv
+- mov
+- mkv
+- mp3
+- wav
+- m4a
+- ogg
+- 3gp
+- flac
+- pdf
+included_folders: []
+keep_module_file_versions: false
+max_note_depth: -1
+md_entrypoint_path_str: output/md/index.md
+md_folder_path_str: output/md
+md_source_host_urls: []
+meta_modules_post:
+- name: resource_logger
+  persistent: true
+module_config:
+  get_file_list:
+    exclude_glob:
+      value:
+      - .obsidian/**/*
+      - .trash/**/*
+      - .DS_Store/**/*
+      - .git/**/*
+    include_glob:
+      value: '*'
+module_data_folder: output/mod
+module_list:
+  convert_markdown_to_html: []
+  convert_note_to_markdown: []
+  finalize:
+  - description:
+    - Creates the log of which module resources were accessed by which module
+    - Requires persistent meta_module of the same name to work!
+    method: finalize
+    name: resource_logger
+    persistent: true
+  preparation:
+  - description: Merges the user config with default config and runs checks.
+    name: process_config
+  - description: Determine all paths of interest based on input.
+    name: load_paths
+  - description: Fills in auto values that can be read from the vault config.
+    name: process_config_auto
+  - description: Prepare and export templates used to create html output.
+    name: html_templater
+    persistent: true
+  - name: load_graphers
+    persistent: true
+  - description:
+    - Basic file listing based on include_folder/exclude_glob combination
+    - Further filtering can be done in further modules
+    name: get_file_list
+  - description:
+    - Gets the metadata of each markdown file, and stores it under metadata/<rel_filepath>.json
+    name: parse_metadata
+  - description:
+    - Filter out markdown files that do not comply to certain metadata requirements
+    name: filter_on_metadata
+  - description:
+    - Copy vault to temporary directory, so that we can edit the obsidian notes themselves
+      safely.
+    - Must be persistent!
+    name: copy_vault_to_tempdirectory
+    persistent: true
+  - description:
+    - Ensures the output folders are created
+    - Optionally removes previous output if it exists in the target directories
+    name: prepare_output_folders
+navbar_links: []
+obsidian_entrypoint_path_str: ./
+resolve_output_file_links: true
+site_name: Obsidian-Html/Notes
+toggles:
+  allow_duplicate_filenames_in_root: true
+  compile_html: true
+  compile_md: true
+  debug_filetree_keys: false
+  external_blank: false
+  features:
+    backlinks:
+      enabled: true
+    breadcrumbs:
+      enabled: false
+    callouts:
+      enabled: true
+    code_highlight:
+      enabled: true
+    create_index_from_dir_structure:
+      enabled: true
+      exclude_files:
+      - .gitignore
+      - favicon.ico
+      - not_created.html
+      exclude_subfolders:
+      - .git
+      - __src
+      - md
+      - obs.html
+      homepage_label: index
+      rel_output_path: obs.html/dir_index.html
+      styling:
+        show_icon: true
+      verbose: false
+    create_index_from_tags:
+      add_links_in_graph_tree: true
+      enabled: false
+      exclude_paths:
+      - .gitignore
+      homepage_label: index
+      match_on_inline_tags: false
+      rel_output_path: obs.html/tag_index.md
+      sort:
+        key_path: ''
+        method: none
+        none_on_bottom: true
+        reverse: false
+        value_prefix: ''
+      styling:
+        include_folder_in_link: false
+      tags: []
+      use_as_homepage: false
+      verbose: false
+    dataview:
+      enabled: false
+      folder: obs.html/export
+    embedded_note_titles:
+      enabled: true
+      hide_on_h1: true
+    embedded_search:
+      enabled: false
+    eraser:
+      enabled: true
+    folder_notes:
+      enabled: false
+      naming: folder name
+      placement: outside folder
+    footnote_md_extension:
+      enabled: true
+    graph:
+      coalesce_force: '-30'
+      enabled: true
+      show_inclusions_in_graph: true
+      styling:
+        show_icon: true
+      templates:
+      - id: 2d
+        name: 2d
+        path: builtin<2d>
+      - id: 3d
+        name: 3d
+        path: builtin<3d>
+    math_latex:
+      enabled: true
+    mermaid_diagrams:
+      enabled: true
+      strip_special_chars: false
+    post_processing: []
+    rss:
+      channel:
+        description: <your description>
+        language_code: en-us
+        managing_editor: n/a
+        title: Notes
+        web_master: n/a
+        website_link: <https://your website.com>
+      enabled: false
+      host_root: https://localhost:8000/
+      items:
+        description:
+          selectors:
+          - - yaml
+            - rss:description
+          - - first-paragraphs
+            - 2
+            - <br/><br/>
+          - - first-header
+            - 1
+        publish_date:
+          default_value: ''
+          format_string: ''
+          iso_formatted: true
+          selectors:
+          - - yaml
+            - rss:publish_date
+          - - yaml_strip
+            - tags
+            - - date/
+        selector:
+          exclude_files:
+          - not_created.html
+          - index.html
+          exclude_keys: []
+          exclude_subfolders:
+          - .git
+          - obs.html
+          include_subfolders: []
+          match_keys: []
+        title:
+          selectors:
+          - - yaml
+            - rss:title
+          - - first-header
+            - 1
+          - - path
+            - - parent
+              - 1
+            - /
+            - - stem
+      styling:
+        show_icon: true
+    search:
+      add_files: true
+      enabled: true
+      styling:
+        show_icon: true
+      try_preload: false
+    side_pane:
+      left_pane:
+        close_if_empty: false
+        content_args:
+          div_selector: .content
+          rel_path: index.html
+          strip_sub_divs:
+          - .toc
+          strip_tags: []
+        contents: dir_tree
+        enabled: true
+        width: 20rem
+      right_pane:
+        close_if_empty: true
+        content_args:
+          div_selector: .content
+          rel_path: index.html
+          strip_sub_divs:
+          - .toc
+        contents: toc
+        enabled: true
+        width: 16rem
+    smiles:
+      enabled: false
+      height: 300px
+      theme: dark
+      width: 100%
+    styling:
+      accent_color: 65, 76, 253
+      add_dir_list: true
+      add_toc: <DEPRECATED>
+      flip_panes: <DEPRECATED>
+      header_template: full
+      layout: documentation
+      loading_bg_color: 22, 22, 22
+      max_note_width: 120rem
+      toc_pane: <DEPRECATED>
+    table_of_contents:
+      add_toc_when_missing: false
+      only_show_for_multiple_headers: true
+    tags_page:
+      enabled: true
+      styling:
+        show_icon: true
+        show_in_note_footer: true
+    theme_picker:
+      enabled: true
+      styling:
+        show_icon: true
+  force_filename_to_lowercase: true
+  img_alt_text_use_figure: true
+  no_clean: false
+  preserve_inline_tags: true
+  process_all: false
+  relative_path_html: false
+  relative_path_md: true
+  slugify_html_links: false
+  stdout_current_file: false
+  strict_line_breaks: auto
+  verbose_printout: false
+  warn_on_skipped_file: true
+  warn_on_skipped_image: true
+  wrap_inclusions: false
+verbosity: info
+video_format_suffixes:
+- mp4
+- webm
+- ogv
+- mov
+- mkv