diff --git a/config.yml b/config.yml
index 38091f5..e872775 100644
--- a/config.yml
+++ b/config.yml
@@ -5,7 +5,9 @@
 # should be in obsidian_folder_path_str
 # Can be absent when toggles/compile_md == False
 # Use full path or relative path, but don't use ~/
-obsidian_entrypoint_path_str: './'
+obsidian_folder_path_str: 'C:/Users/jackb/Documents/obsidian/jack/' 
+
+obsidian_entrypoint_path_str: 'C:/Users/jackb/Documents/obsidian/jack/Index.md'
 
 # Input and output path of markdown files
 # This can be an absolute or a relative path (relative to the working directory when calling obsidianhtml)
@@ -71,10 +73,6 @@ module_list:
       description:
         - Gets the metadata of each markdown file, and stores it under metadata/<rel_filepath>.json
 
-    - name: filter_on_metadata
-      description:
-        - Filter out markdown files that do not comply to certain metadata requirements
-
     - name: copy_vault_to_tempdirectory
       description: 
         - Copy vault to temporary directory, so that we can edit the obsidian notes themselves safely.
@@ -116,7 +114,7 @@ keep_module_file_versions: False
 module_config:
   get_file_list:
     include_glob:
-      value: '*'
+      value: "*.md"
     exclude_glob:
       value: 
         - ".obsidian/**/*"
diff --git a/output/mod/arguments.yml b/output/mod/arguments.yml
deleted file mode 100644
index ae0f85c..0000000
--- a/output/mod/arguments.yml
+++ /dev/null
@@ -1,4 +0,0 @@
-command:
-- convert
-config_path: config.yml
-literals: {}
diff --git a/output/mod/capabilities.json b/output/mod/capabilities.json
deleted file mode 100644
index be7d8a4..0000000
--- a/output/mod/capabilities.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
-  "directory_tree": true,
-  "search_data": true,
-  "graph_data": true,
-  "embedded_note_titles": true
-}
\ No newline at end of file
diff --git a/output/mod/config.yml b/output/mod/config.yml
deleted file mode 100644
index 941277a..0000000
--- a/output/mod/config.yml
+++ /dev/null
@@ -1,328 +0,0 @@
-_css_file: main_documentation.css
-audio_format_suffixes:
-- mp3
-- webm
-- wav
-- m4a
-- ogg
-- 3gp
-- flac
-copy_output_file_method: default
-copy_vault_to_tempdir: true
-copy_vault_to_tempdir_follow_copy: false
-copy_vault_to_tempdir_method: default
-embeddable_file_suffixes:
-- pdf
-exclude_glob:
-- /.obsidian
-- /.trash
-- /.DS_Store
-- /.git
-exclude_subfolders: <DEPRECATED>
-file_exports: []
-html_custom_footer_inclusions: []
-html_custom_inclusions: []
-html_output_folder_path_str: output/html
-html_template_path_str: ''
-html_url_prefix: ''
-included_file_suffixes:
-- jpg
-- jpeg
-- gif
-- png
-- bmp
-- svg
-- mp4
-- webm
-- ogv
-- mov
-- mkv
-- mp3
-- wav
-- m4a
-- ogg
-- 3gp
-- flac
-- pdf
-included_folders: []
-keep_module_file_versions: false
-max_note_depth: -1
-md_entrypoint_path_str: output/md/index.md
-md_folder_path_str: output/md
-md_source_host_urls: []
-meta_modules_post:
-- name: resource_logger
-  persistent: true
-module_config:
-  get_file_list:
-    exclude_glob:
-      value:
-      - .obsidian/**/*
-      - .trash/**/*
-      - .DS_Store/**/*
-      - .git/**/*
-    include_glob:
-      value: '*'
-module_data_folder: output/mod
-module_list:
-  convert_markdown_to_html: []
-  convert_note_to_markdown: []
-  finalize:
-  - description:
-    - Creates the log of which module resources were accessed by which module
-    - Requires persistent meta_module of the same name to work!
-    method: finalize
-    name: resource_logger
-    persistent: true
-  preparation:
-  - description: Merges the user config with default config and runs checks.
-    name: process_config
-  - description: Determine all paths of interest based on input.
-    name: load_paths
-  - description: Fills in auto values that can be read from the vault config.
-    name: process_config_auto
-  - description: Prepare and export templates used to create html output.
-    name: html_templater
-    persistent: true
-  - name: load_graphers
-    persistent: true
-  - description:
-    - Basic file listing based on include_folder/exclude_glob combination
-    - Further filtering can be done in further modules
-    name: get_file_list
-  - description:
-    - Gets the metadata of each markdown file, and stores it under metadata/<rel_filepath>.json
-    name: parse_metadata
-  - description:
-    - Filter out markdown files that do not comply to certain metadata requirements
-    name: filter_on_metadata
-  - description:
-    - Copy vault to temporary directory, so that we can edit the obsidian notes themselves
-      safely.
-    - Must be persistent!
-    name: copy_vault_to_tempdirectory
-    persistent: true
-  - description:
-    - Ensures the output folders are created
-    - Optionally removes previous output if it exists in the target directories
-    name: prepare_output_folders
-navbar_links: []
-obsidian_entrypoint_path_str: ./
-obsidian_folder_path_str: <DEPRECATED>
-resolve_output_file_links: true
-site_name: Obsidian-Html/Notes
-toggles:
-  allow_duplicate_filenames_in_root: true
-  compile_html: true
-  compile_md: true
-  debug_filetree_keys: false
-  external_blank: false
-  features:
-    backlinks:
-      enabled: true
-    breadcrumbs:
-      enabled: false
-    callouts:
-      enabled: true
-    code_highlight:
-      enabled: true
-    create_index_from_dir_structure:
-      enabled: true
-      exclude_files:
-      - .gitignore
-      - favicon.ico
-      - not_created.html
-      exclude_subfolders:
-      - .git
-      - __src
-      - md
-      - obs.html
-      homepage_label: index
-      rel_output_path: obs.html/dir_index.html
-      styling:
-        show_icon: true
-      verbose: false
-    create_index_from_tags:
-      add_links_in_graph_tree: true
-      enabled: false
-      exclude_paths:
-      - .gitignore
-      homepage_label: index
-      match_on_inline_tags: false
-      rel_output_path: obs.html/tag_index.md
-      sort:
-        key_path: ''
-        method: none
-        none_on_bottom: true
-        reverse: false
-        value_prefix: ''
-      styling:
-        include_folder_in_link: false
-      tags: []
-      use_as_homepage: false
-      verbose: false
-    dataview:
-      enabled: false
-      folder: obs.html/export
-    embedded_note_titles:
-      enabled: true
-      hide_on_h1: true
-    embedded_search:
-      enabled: false
-    eraser:
-      enabled: true
-    folder_notes:
-      enabled: false
-      naming: folder name
-      placement: outside folder
-    footnote_md_extension:
-      enabled: true
-    graph:
-      coalesce_force: '-30'
-      enabled: true
-      show_inclusions_in_graph: true
-      styling:
-        show_icon: true
-      templates:
-      - id: 2d
-        name: 2d
-        path: builtin<2d>
-      - id: 3d
-        name: 3d
-        path: builtin<3d>
-    math_latex:
-      enabled: true
-    mermaid_diagrams:
-      enabled: true
-      strip_special_chars: false
-    post_processing: []
-    rss:
-      channel:
-        description: <your description>
-        language_code: en-us
-        managing_editor: n/a
-        title: Notes
-        web_master: n/a
-        website_link: <https://your website.com>
-      enabled: false
-      host_root: https://localhost:8000/
-      items:
-        description:
-          selectors:
-          - - yaml
-            - rss:description
-          - - first-paragraphs
-            - 2
-            - <br/><br/>
-          - - first-header
-            - 1
-        publish_date:
-          default_value: ''
-          format_string: ''
-          iso_formatted: true
-          selectors:
-          - - yaml
-            - rss:publish_date
-          - - yaml_strip
-            - tags
-            - - date/
-        selector:
-          exclude_files:
-          - not_created.html
-          - index.html
-          exclude_keys: []
-          exclude_subfolders:
-          - .git
-          - obs.html
-          include_subfolders: []
-          match_keys: []
-        title:
-          selectors:
-          - - yaml
-            - rss:title
-          - - first-header
-            - 1
-          - - path
-            - - parent
-              - 1
-            - /
-            - - stem
-      styling:
-        show_icon: true
-    search:
-      add_files: true
-      enabled: true
-      styling:
-        show_icon: true
-      try_preload: false
-    side_pane:
-      left_pane:
-        close_if_empty: false
-        content_args:
-          div_selector: .content
-          rel_path: index.html
-          strip_sub_divs:
-          - .toc
-          strip_tags: []
-        contents: dir_tree
-        enabled: true
-        width: 20rem
-      right_pane:
-        close_if_empty: true
-        content_args:
-          div_selector: .content
-          rel_path: index.html
-          strip_sub_divs:
-          - .toc
-        contents: toc
-        enabled: true
-        width: 16rem
-    smiles:
-      enabled: false
-      height: 300px
-      theme: dark
-      width: 100%
-    styling:
-      accent_color: 65, 76, 253
-      add_dir_list: true
-      add_toc: <DEPRECATED>
-      flip_panes: <DEPRECATED>
-      header_template: full
-      layout: documentation
-      loading_bg_color: 22, 22, 22
-      max_note_width: 120rem
-      toc_pane: <DEPRECATED>
-    table_of_contents:
-      add_toc_when_missing: false
-      only_show_for_multiple_headers: true
-    tags_page:
-      enabled: true
-      styling:
-        show_icon: true
-        show_in_note_footer: true
-    theme_picker:
-      enabled: true
-      styling:
-        show_icon: true
-  force_filename_to_lowercase: true
-  img_alt_text_use_figure: true
-  no_clean: false
-  no_tabs: true
-  preserve_inline_tags: true
-  process_all: false
-  relative_path_html: false
-  relative_path_md: true
-  slugify_html_links: false
-  stdout_current_file: false
-  strict_line_breaks: false
-  verbose_printout: false
-  warn_on_skipped_file: true
-  warn_on_skipped_image: true
-  wrap_inclusions: false
-verbosity: info
-video_format_suffixes:
-- mp4
-- webm
-- ogv
-- mov
-- mkv
diff --git a/output/mod/graphers.json b/output/mod/graphers.json
deleted file mode 100644
index 922c6a7..0000000
--- a/output/mod/graphers.json
+++ /dev/null
@@ -1,14 +0,0 @@
-[
-  {
-    "id": "2d",
-    "name": "2d",
-    "path": "builtin<2d>",
-    "contents": "// This function is called by obshtml when it wants to open the graph\nfunction run(args) {\n    if (window.ObsHtmlGraph.graph_dependencies_loaded['2d'] == false){\n        // load three dependencies in succession and then run initGraph(args)\n        load_script_on_demand(\n            '//unpkg.com/force-graph', load_script_on_demand, [\"//unpkg.com/d3-force\", load_script_on_demand, [\"https://d3js.org/d3.v4.min.js\", initGraph, [args]]]\n        )\n        // tell obshtml that the dependencies have been loaded\n        window.ObsHtmlGraph.graph_dependencies_loaded['2d'] = true;\n\n    }\n    else {\n        // just run directly\n        initGraph(args)\n    }\n}\n\nfunction initGraph(args) {\n    // open div right before loading the graph to avoid opening an empty div\n    args.graph_container.style.display = \"block\";\n\n    // Load data then start graph\n    fetch(args.data).then(res => res.json()).then(data => {\n\n        // overwrites\n        let g = window.ObsHtmlGraph.graphs[args.uid];\n        g.actions['select_node'] = function(args, graph){\n            return graph_select_node(args, graph)\n        }\n\n        g.graph = ForceGraph()\n            (args.graph_container)\n            .graphData(data)\n            .width(args.width)\n            .maxZoom(10)\n            .height(args.height)\n            .backgroundColor(g.colors.bg)\n            .nodeLabel('name')\n            .d3Force(\"charge\", d3.forceManyBody().strength(args.coalesce_force))\n            .nodeColor((node) => {return g.colors.node_inactive})\n            .nodeCanvasObjectMode(() => 'after')\n            .nodeCanvasObject((node, ctx, globalScale) => {\n                // draw text only for nodes connected to the current node\n                let isConnected = false;\n                node.links.forEach(link => {\n                    if (link == g.current_node_id){\n                        isConnected = true;\n                    }\n                })\n                // draw text\n                if (isConnected){\n                    const label = node.name;\n                    const fontSize = 11 / globalScale;\n                    ctx.font = `${fontSize}px Sans-Serif`;\n                    const textWidth = ctx.measureText(label).width;                \n                    ctx.textAlign = 'center';\n                    ctx.textBaseline = 'middle';\n                    ctx.fillStyle = g.colors.text;\n                    ctx.fillText(label, node.x, node.y+8);\n                }\n                \n                // color only main node & semiconnected\n                if (node.id != g.current_node_id){\n                    if (isConnected){\n                        ctx.beginPath();\n                        ctx.arc(node.x, node.y, 4, 0, 2 * Math.PI);\n                        ctx.fillStyle = g.colors.node_semiactive;\n                        ctx.fill();\n                    }\n                    return\n                }\n\n                // color node\n                ctx.beginPath();\n                ctx.arc(node.x, node.y, 4+1, 0, 2 * Math.PI);\n                ctx.fillStyle = g.colors.node_active_border;\n                ctx.fill();\n                ctx.beginPath();\n                ctx.arc(node.x, node.y, 4, 0, 2 * Math.PI);\n                ctx.fillStyle = g.colors.node_active;\n                ctx.fill();\n\n            })\n            .linkColor(link => {\n                if (link.source.id == g.current_node_id){\n                    return g.colors.link_active\n                }\n                if (link.target.id == g.current_node_id){\n                    return g.colors.link_active\n                }\n                return g.colors.link_inactive\n            })\n            .linkDirectionalParticles(\"value\")\n            .linkDirectionalParticleSpeed(0.010)\n            .linkDirectionalParticleWidth(link => {\n                if (link.source.id == g.current_node_id || link.target.id == g.current_node_id){\n                    return 4.0\n                }\n                return 0\n            })\n            // [425] Add included references as links in graph view\n            .linkLineDash(link => {\n                if (link.type == 'inclusion'){\n                    return [1,1]\n                }\n                return false;\n            })\n            .onNodeClick(node => {\n                args.node = node;\n                g.actions['left_click'](args)\n            })\n            .onNodeRightClick(node => {\n                args.node = node;\n                g.current_node_id = node.id\n                g.actions['right_click'](args)\n            })\n        \n        setTimeout( () => g.graph.zoomToFit(1000, rem(3), function(n){return initGraphDone(n, args)}), 1000 );\n    });\n}\n\nfunction initGraphDone(n, args){\n    // show help text\n    let button = document.getElementById('B'+args['uid'])\n    if (button.innerHTML == 'Hide Graph'){\n        document.getElementById('D'+args['uid']).classList.add('fadein');\n    }\n    else {\n        document.getElementById('D'+args['uid']).classList.remove('fadein');\n    } \n\n    // zoom toward current node\n    zoom_select(n, args)\n}\n\n// HELPER FUNCTIONS\n/////////////////////////////////////////////////////////////////////////////////////\n\nfunction graph_select_node(args){\n    let g = window.ObsHtmlGraph.graphs[args.uid];\n    g.current_node_id = args.node.id;\n\n    g.graph.zoomToFit(1000, rem(3), function(n){return zoom_select(n, args)})\n    return false;\n}\n\nfunction zoom_select(n, args){\n    let g = window.ObsHtmlGraph.graphs[args.uid];\n    if (g == undefined){ // graph closed before settimeout got around to zooming\n        return false\n    }\n\n    if (n.id == g.current_node_id){\n        return true\n    }\n    for (let i=0;i<n.links.length;i++){\n        if (n.links[i] == g.current_node_id){\n            return true\n        }\n    }\n    return false\n}\n\n/////////////////////////////////////////////////////////////////////////////////////\n\n// export the run() method so that it can be called by obshtml\nexport { \n    run\n};"
-  },
-  {
-    "id": "3d",
-    "name": "3d",
-    "path": "builtin<3d>",
-    "contents": "function run(args) {\n    function start(){\n        args.graph_container.style.display = \"block\";       // open div right before loading the graph to avoid opening an empty div\n        initGraph_3d(args)\n        window.ObsHtmlGraph.graph_dependencies_loaded['3d'] = true;\n    }\n\n    if (window.ObsHtmlGraph.graph_dependencies_loaded['3d'] == false){\n        load_script_on_demand(\n            CONFIGURED_HTML_URL_PREFIX + '/obs.html/static/3d-force-graph.js', \n            start,\n            []\n        )\n    }\n    else {\n        start();\n    }\n}\n\nfunction initGraph_3d(args) {\n    let g = window.ObsHtmlGraph.graphs[args.uid];\n    g.graph = ForceGraph3D()\n        (args.graph_container)\n        .jsonUrl(args.data)\n        .width(args.width)\n        .height(args.height)\n        .nodeLabel('name')\n        .linkDirectionalParticles(\"value\")\n        .linkDirectionalParticleSpeed(0.010)\n        .linkDirectionalParticleWidth(2.0)\n        .nodeColor(node => {\n            if (node.id == g.current_node_id){\n                return '#ff0000'\n            }\n            let isConnected = false;\n            node.links.forEach(link => {\n                if (link == g.current_node_id){\n                    isConnected = true;\n                }\n            })\n            if (isConnected){\n                return '#f7be49';\n            }\n            return '#ffffff'\n        })\n        .linkColor(link => {\n            if (link.source == g.current_node_id || link.target == g.current_node_id){\n                return '#ff0000'\n            }\n            return '#dadada'\n        })\n        .linkOpacity(0.3)\n        .onNodeClick(node => {\n            args.node = node;\n            g.actions['left_click'](args)\n        })\n        .onNodeRightClick(node => {\n            args.node = node;\n            g.actions['right_click'](args, g.graph)\n        });\n}\n\n\nexport { \n    run\n};"
-  }
-]
\ No newline at end of file
diff --git a/output/mod/guid.txt b/output/mod/guid.txt
deleted file mode 100644
index 3d91caf..0000000
--- a/output/mod/guid.txt
+++ /dev/null
@@ -1 +0,0 @@
-3cd6efe0-8d37-4c4b-8e21-d5e5906014c0
\ No newline at end of file
diff --git a/output/mod/html/dynamic_footer_inclusions.html b/output/mod/html/dynamic_footer_inclusions.html
deleted file mode 100644
index 8b13789..0000000
--- a/output/mod/html/dynamic_footer_inclusions.html
+++ /dev/null
@@ -1 +0,0 @@
-
diff --git a/output/mod/html/dynamic_inclusions.html b/output/mod/html/dynamic_inclusions.html
deleted file mode 100644
index 8b13789..0000000
--- a/output/mod/html/dynamic_inclusions.html
+++ /dev/null
@@ -1 +0,0 @@
-
diff --git a/output/mod/html/graph.template.html b/output/mod/html/graph.template.html
deleted file mode 100644
index 992d2f2..0000000
--- a/output/mod/html/graph.template.html
+++ /dev/null
@@ -1,26 +0,0 @@
-<div class="graph requires_js {graph_classes}">
-    <div id="A{id}{level}" class="graph_div"></div>
-
-    <div class="graph-instructions" id="D{id}{level}">
-        Left-click: follow link, Right-click: select node, Scroll: zoom
-    </div>
-    
-    <div class="graph-button-row" style="display:flex;">
-        <button class="graph_button graph_show_button" id="B{id}{level}" level="{level}" note_temp_id="{id}" onclick="window.ObsHtmlGraph.run(this, '{id}', '{pinnedNode}');">
-            Show Graph
-        </button>
-        <button class="graph_button graph_type_button" id="C{id}{level}" style="flex:1" onclick="window.ObsHtmlGraph.switch_graph_type(this);">
-            2D
-        </button>
-    </div>
-</div>
-
-<script type="module">
-    if (window.ObsHtmlGraph == undefined){
-        import('{html_url_prefix}/obs.html/static/graph.js').then((Module) => {
-            window.ObsHtmlGraph = Module;
-            window.ObsHtmlGraph.arm_page(document.getElementById('page_holder'))
-        })
-    }
-</script>
-
diff --git a/output/mod/html/graph_full_page.template.html b/output/mod/html/graph_full_page.template.html
deleted file mode 100644
index f842a31..0000000
--- a/output/mod/html/graph_full_page.template.html
+++ /dev/null
@@ -1,114 +0,0 @@
-<!DOCTYPE html>
-
-<html lang="en">
-
-        <head>
-                <!-- Page information -->
-                <meta charset="UTF-8" />
-                <meta name="node_id" content="{node_id}">
-                <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-                <link rel="shortcut icon" href="{html_url_prefix}/favicon.ico" />
-
-                <!-- Set title -->
-                <title>{title}</title>
-
-                <!-- Includes -->
-                {dynamic_includes}
-
-                <!-- Onload tweaks -->
-                <script>
-                        const CURRENT_NODE = '{pinnedNode}';
-                        const HTML_URL_PREFIX = '{html_url_prefix}';
-                        const PAGE_DEPTH = {page_depth};
-                        const CONFIGURED_HTML_URL_PREFIX = '{configured_html_url_prefix}';
-                </script>
-        </head>
-
-<body class="theme-obs-light">
-    <div id="antiflash" style="display: none;"></div>
-    <script>
-            document.getElementById('antiflash').style.display = 'block';
-    </script>
-    {search_html}
-
-    <div id="page_holder" class="flex_col">
-            <div id="header" class="header">
-                    <div id="header_flex" class="flex_row">
-                            <a href="{html_url_prefix}/index.html" id="homelink" title="Clear screen and go to homepage">{title}</a>
-                            <div class="navbar-button" onclick="toggle_menu()">
-                                    ≡
-                            </div>
-                            <div id="navbar" class="navbar">
-                                {{navbar_links}}
-                                <div class="icon-tray">
-                                    {theme_button}
-                                    {search_button}
-                                    {graph_button}
-                                    {dirtree_button}
-                                    {tags_page_button}
-                                    {rss_button}
-                                </div>
-                            </div>
-                    </div>
-                    {theme_popup}
-            </div>
-            
-            <div class="graph_full_page">
-                <div class="graph-button-row" style="display:flex;">
-                    <button class="graph_button graph_show_button" id="Bgraph_full_page" level="" note_temp_id="graph_full_page" style="visibility: hidden; margin:0px">
-                        Show Graph
-                    </button>
-                    <button class="graph_button graph_type_button" id="Cgraph_full_page" style="flex:1; margin:0px; margin-right:0.2rem;" onclick="window.ObsHtmlGraph.switch_graph_type(this);">
-                        2D
-                    </button>
-                </div>
-                    <div id="Agraph_full_page" class="graph_div_full"></div>
-                    <div class="graph-instructions fadein" id="Dgraph_full_page">
-                        Left-click: follow link, Right-click: select node, Scroll: zoom
-                    </div>
-            </div>
-                        
-            
-
-    </div>
-    
-    <script type="module">
-        document.addEventListener('DOMContentLoaded', load_fullpage_graph);
-
-        function load_fullpage_graph(){
-
-            // set graph_type button correctly
-            let type_d = ls_get('graph_type_d');
-            if (!type_d){
-                ls_set('graph_type_d', '2D');
-                type_d = '2D';
-            }
-            document.getElementById('Cgraph_full_page').innerHTML = type_d;
-            
-            import('{html_url_prefix}/obs.html/static/graph.js').then((Module) => {
-                window.ObsHtmlGraph = Module;
-                window.ObsHtmlGraph.arm_page(document.getElementById('page_holder'))
-
-                // overwrites
-                window.ObsHtmlGraph.default_actions['open_link'] = function (args){
-                    console.log('hi openlink')
-                    return window.ObsHtmlGraph.graph_open_link_normal(args)()
-                }
-
-
-                // Get node id from the page where we clicked on the icon for the fullpage graph
-                const urlParams = new URLSearchParams(window.location.search);
-                const pinnedNode = urlParams.get('node');
-
-                // Immediately run graph instead of waiting for button click
-                window.ObsHtmlGraph.run(document.getElementById('Bgraph_full_page'), 'graph_full_page', pinnedNode);
-            })
-        }
-    </script>
-
-{footer_js_inclusions}
-{dynamic_footer_includes}
-
-
-</body>
-</html>
diff --git a/output/mod/html/note.template.html b/output/mod/html/note.template.html
deleted file mode 100644
index fc9b176..0000000
--- a/output/mod/html/note.template.html
+++ /dev/null
@@ -1,171 +0,0 @@
-<!DOCTYPE html>
-
-<html lang="en">
-
-        <head>
-                <!-- Page information -->
-                <meta charset="UTF-8" />
-                <meta name="node_id" content="{node_id}">
-                <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-                <link rel="shortcut icon" href="{html_url_prefix}/favicon.ico" />
-
-                <!-- Set title -->
-                <title>{title}</title>
-
-                <!-- Includes -->
-                {dynamic_includes}
-
-                <!-- Onload tweaks -->
-                <script>
-                        const CURRENT_NODE = '{pinnedNode}';
-                        const HTML_URL_PREFIX = '{html_url_prefix}';
-                        const PAGE_DEPTH = {page_depth};
-                </script>
-        </head>
-
-<body class="theme-obs-light">
-        <div id="antiflash" style="display: none;"></div>
-        <script>
-                document.getElementById('antiflash').style.display = 'block';
-        </script>
-        {search_html}
-
-        <div id="page_holder" class="flex_col">
-                {header}
-                <div class="flex_row">
-                        {left_pane}
-                        <div class="container">
-                                {content}
-                                <!-- end content -->
-                        </div>
-                        <div class="container_filler">
-                        </div>
-                        {right_pane}
-                </div>
-        </div>
-
-        <script>
-                function handle_toggle_side_bar(e){
-                        let header;
-                        let pane; 
-                        let target = e.target
-
-                        // switch out the navbar button click for a header click
-                        if (target.id == 'left_pane_toggle_nav'){
-                                target = document.getElementById('left_pane_fold_header')
-                        }
-                        else if (target.id == 'right_pane_toggle_nav'){
-                                target = document.getElementById('right_pane_fold_header')
-                        }
-
-                        // get header and pane
-                        if (target.classList.contains('fold_header')) {
-                                header = target;
-                                pane = target.parentElement;
-                        }
-                        else {
-                                pane = target;
-                                header = target.getElementsByClassName('fold_header')[0];
-                        }
-                        toggle_side_bar(pane, header, true)
-                        e.stopPropagation();
-                }
-                function handle_toggle_side_bar_button(e){
-                        document.getElementById('menu_toggle_button').click()
-                        handle_toggle_side_bar(e);
-                }
-
-                function toggle_side_bar(pane, header, save) {
-                        let active = (pane.classList.contains('active'))
-                        if (active){
-                                disable_side_bar(pane, header, save);
-                        }
-                        else {
-                                enable_side_bar(pane, header, save);
-                        }
-                }
-                function enable_side_bar(pane, header, save){
-                        pane.classList.add('active');
-                        pane.removeEventListener('click', handle_toggle_side_bar);
-                        header.addEventListener('click', handle_toggle_side_bar);
-                        set_correct_header_symbol(header);
-                        if (save){ save_panel_folding_state(header, true) }
-                }
-                function disable_side_bar(pane, header, save){
-                        pane.classList.remove('active');
-                        pane.addEventListener('click', handle_toggle_side_bar);
-                        header.removeEventListener('click', handle_toggle_side_bar);
-                        set_correct_header_symbol(header);
-                        if (save){ save_panel_folding_state(header, false) }
-                }
-                function set_correct_header_symbol(header){
-                        let pane = header.parentElement;
-                        let symbol = [['>', '<'],['<', '>']]
-                        symbol = symbol[Number(header.classList.contains('right_pane_fold_header'))][Number(pane.classList.contains('active'))];
-                        console.log(symbol);
-                        header.innerHTML = symbol
-                        return header;
-                }
-                function panel_folding_get_panel_name(header){
-                        return ['left', 'right'][Number(header.classList.contains('right_pane_fold_header'))]
-                }
-                function save_panel_folding_state(header, active){
-                        ls_set('pane_folding_state_'+panel_folding_get_panel_name(header), Number(active));
-                }
-                function load_panel_folding_state(panel_name){
-                        val = ls_get('pane_folding_state_'+panel_name)
-                        if (!val){ return {'exists': false, 'value': null}}
-                        return {'exists': true, 'value': Boolean(Number(val))}
-                }
-                function set_pane_folding_start(left_header, right_header){
-                        // small screen = closed
-                        let right_pane_enabled = true;
-                        let left_pane_enabled = true;
-                        let w = window.visualViewport.width
-                        if (w < 1000){
-                                left_pane_enabled = false
-                        }
-                        if (w < 800){
-                                right_pane_enabled = false
-                        }
-
-                        // get saved values if present
-                        let rval = load_panel_folding_state('right')
-                        if (rval['exists']){
-                                right_pane_enabled = rval['value']
-                        }
-                        let lval = load_panel_folding_state('left')
-                        if (lval['exists']){
-                                left_pane_enabled = lval['value']
-                        }
-
-                        // default = enabled, so we only need to disable
-                        if (!left_pane_enabled){
-                                disable_side_bar(document.getElementById('left_pane'), document.getElementById('left_pane_fold_header'))
-                        }
-                        if (!right_pane_enabled){
-                                disable_side_bar(document.getElementById('right_pane'), document.getElementById('right_pane_fold_header'))
-                        }
-                }
-
-                function init_pane_folding(header){
-                        set_correct_header_symbol(header);
-                        header.addEventListener('click', handle_toggle_side_bar);
-                }
-                
-                
-                set_pane_folding_start()
-                init_pane_folding(document.getElementById('left_pane_fold_header'));
-                init_pane_folding(document.getElementById('right_pane_fold_header'));
-
-                document.getElementById('left_pane_toggle_nav').addEventListener('click', handle_toggle_side_bar_button);
-                document.getElementById('right_pane_toggle_nav').addEventListener('click', handle_toggle_side_bar_button);
-        </script>
-
-        {footer_js_inclusions}
-        {dynamic_footer_includes}
-
-
-
-</body>
-</html>
diff --git a/output/mod/modfile_dependencies.json b/output/mod/modfile_dependencies.json
deleted file mode 100644
index 80fe31f..0000000
--- a/output/mod/modfile_dependencies.json
+++ /dev/null
@@ -1,174 +0,0 @@
-{
-  "log.resources": {
-    "provided_by": [
-      "resource_logger (ResourceLoggerMetaModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "config.yml": {
-    "provided_by": [
-      "setup_module (SetupModule)"
-    ],
-    "required_by": [
-      "resource_logger (ResourceLoggerMetaModule)",
-      "process_config (ProcessConfigModule)",
-      "load_paths (LoadPathsModule)",
-      "process_config_auto (ProcessConfigAutoModule)",
-      "html_templater (HtmlTemplaterModule)",
-      "load_graphers (LoadGrapherModule)",
-      "get_file_list (GetFileListModule)",
-      "copy_vault_to_tempdirectory (VaultCopyModule)",
-      "prepare_output_folders (PrepareOutputFoldersModule)"
-    ],
-    "altered_by": [
-      "process_config (ProcessConfigModule)",
-      "process_config_auto (ProcessConfigAutoModule)"
-    ]
-  },
-  "capabilities.json": {
-    "provided_by": [
-      "process_config (ProcessConfigModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "arguments.yml": {
-    "provided_by": [
-      "setup_module (SetupModule)"
-    ],
-    "required_by": [
-      "process_config (ProcessConfigModule)"
-    ],
-    "altered_by": []
-  },
-  "paths.json": {
-    "provided_by": [
-      "load_paths (LoadPathsModule)"
-    ],
-    "required_by": [
-      "process_config_auto (ProcessConfigAutoModule)",
-      "get_file_list (GetFileListModule)",
-      "parse_metadata (ParseMetadataModule)",
-      "filter_on_metadata (FilterOnMetadataModule)",
-      "copy_vault_to_tempdirectory (VaultCopyModule)",
-      "prepare_output_folders (PrepareOutputFoldersModule)"
-    ],
-    "altered_by": [
-      "copy_vault_to_tempdirectory (VaultCopyModule)"
-    ]
-  },
-  "html/note.template.html": {
-    "provided_by": [
-      "html_templater (HtmlTemplaterModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "html/dynamic_inclusions.html": {
-    "provided_by": [
-      "html_templater (HtmlTemplaterModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "html/dynamic_footer_inclusions.html": {
-    "provided_by": [
-      "html_templater (HtmlTemplaterModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "html/graph.template.html": {
-    "provided_by": [
-      "load_graphers (LoadGrapherModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "html/graph_full_page.template.html": {
-    "provided_by": [
-      "load_graphers (LoadGrapherModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "graphers.json": {
-    "provided_by": [
-      "load_graphers (LoadGrapherModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "index/files.json": {
-    "provided_by": [
-      "get_file_list (GetFileListModule)"
-    ],
-    "required_by": [
-      "filter_on_metadata (FilterOnMetadataModule)",
-      "copy_vault_to_tempdirectory (VaultCopyModule)"
-    ],
-    "altered_by": [
-      "filter_on_metadata (FilterOnMetadataModule)",
-      "copy_vault_to_tempdirectory (VaultCopyModule)"
-    ]
-  },
-  "index/excluded_files.json": {
-    "provided_by": [
-      "get_file_list (GetFileListModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "index/markdown_files.json": {
-    "provided_by": [
-      "get_file_list (GetFileListModule)"
-    ],
-    "required_by": [
-      "parse_metadata (ParseMetadataModule)",
-      "filter_on_metadata (FilterOnMetadataModule)"
-    ],
-    "altered_by": [
-      "filter_on_metadata (FilterOnMetadataModule)"
-    ]
-  },
-  "index/metadata.json": {
-    "provided_by": [
-      "parse_metadata (ParseMetadataModule)"
-    ],
-    "required_by": [
-      "filter_on_metadata (FilterOnMetadataModule)"
-    ],
-    "altered_by": []
-  },
-  "excluded_files_by_metadata.json": {
-    "provided_by": [
-      "filter_on_metadata (FilterOnMetadataModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "guid.txt": {
-    "provided_by": [
-      "setup_module (SetupModule)"
-    ],
-    "required_by": [
-      "prepare_output_folders (PrepareOutputFoldersModule)"
-    ],
-    "altered_by": []
-  },
-  "user_config.yml": {
-    "provided_by": [
-      "setup_module (SetupModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  },
-  "modfile_dependencies.json": {
-    "provided_by": [
-      "setup_module (SetupModule)"
-    ],
-    "required_by": [],
-    "altered_by": []
-  }
-}
\ No newline at end of file
diff --git a/output/mod/paths.json b/output/mod/paths.json
deleted file mode 100644
index e51c228..0000000
--- a/output/mod/paths.json
+++ /dev/null
@@ -1,16 +0,0 @@
-{
-  "obsidian_folder": "C:/Users/jackb/Documents/obsidian/jack",
-  "md_folder": "C:/Users/jackb/Documents/obsidian/jack/output/md",
-  "obsidian_entrypoint": "C:/Users/jackb/Documents/obsidian/jack",
-  "md_entrypoint": "C:/Users/jackb/Documents/obsidian/jack/output/md/index.md",
-  "html_output_folder": "C:/Users/jackb/Documents/obsidian/jack/output/html",
-  "appdir": "C:/Users/jackb/AppData/Local/obsidianhtml/obsidianhtml",
-  "original_obsidian_folder": "C:/Users/jackb/Documents/obsidian/jack",
-  "original_obsidian_entrypoint": "C:/Users/jackb/Documents/obsidian/jack",
-  "dataview_export_folder": "C:/Users/jackb/Documents/obsidian/jack/obs.html/export",
-  "rel_obsidian_entrypoint": ".",
-  "rel_md_entrypoint_path": "index.md",
-  "input_folder": "C:/Users/jackb/Documents/obsidian/jack",
-  "entrypoint": "C:/Users/jackb/Documents/obsidian/jack",
-  "original_input_folder": "C:/Users/jackb/Documents/obsidian/jack"
-}
\ No newline at end of file
diff --git a/output/mod/user_config.yml b/output/mod/user_config.yml
deleted file mode 100644
index d770499..0000000
--- a/output/mod/user_config.yml
+++ /dev/null
@@ -1,325 +0,0 @@
-audio_format_suffixes:
-- mp3
-- webm
-- wav
-- m4a
-- ogg
-- 3gp
-- flac
-copy_output_file_method: default
-copy_vault_to_tempdir: true
-copy_vault_to_tempdir_follow_copy: false
-copy_vault_to_tempdir_method: default
-embeddable_file_suffixes:
-- pdf
-exclude_glob:
-- /.obsidian
-- /.trash
-- /.DS_Store
-- /.git
-exclude_subfolders: <DEPRECATED>
-file_exports: []
-html_custom_footer_inclusions: []
-html_custom_inclusions: []
-html_output_folder_path_str: output/html
-html_template_path_str: ''
-html_url_prefix: ''
-included_file_suffixes:
-- jpg
-- jpeg
-- gif
-- png
-- bmp
-- svg
-- mp4
-- webm
-- ogv
-- mov
-- mkv
-- mp3
-- wav
-- m4a
-- ogg
-- 3gp
-- flac
-- pdf
-included_folders: []
-keep_module_file_versions: false
-max_note_depth: -1
-md_entrypoint_path_str: output/md/index.md
-md_folder_path_str: output/md
-md_source_host_urls: []
-meta_modules_post:
-- name: resource_logger
-  persistent: true
-module_config:
-  get_file_list:
-    exclude_glob:
-      value:
-      - .obsidian/**/*
-      - .trash/**/*
-      - .DS_Store/**/*
-      - .git/**/*
-    include_glob:
-      value: '*'
-module_data_folder: output/mod
-module_list:
-  convert_markdown_to_html: []
-  convert_note_to_markdown: []
-  finalize:
-  - description:
-    - Creates the log of which module resources were accessed by which module
-    - Requires persistent meta_module of the same name to work!
-    method: finalize
-    name: resource_logger
-    persistent: true
-  preparation:
-  - description: Merges the user config with default config and runs checks.
-    name: process_config
-  - description: Determine all paths of interest based on input.
-    name: load_paths
-  - description: Fills in auto values that can be read from the vault config.
-    name: process_config_auto
-  - description: Prepare and export templates used to create html output.
-    name: html_templater
-    persistent: true
-  - name: load_graphers
-    persistent: true
-  - description:
-    - Basic file listing based on include_folder/exclude_glob combination
-    - Further filtering can be done in further modules
-    name: get_file_list
-  - description:
-    - Gets the metadata of each markdown file, and stores it under metadata/<rel_filepath>.json
-    name: parse_metadata
-  - description:
-    - Filter out markdown files that do not comply to certain metadata requirements
-    name: filter_on_metadata
-  - description:
-    - Copy vault to temporary directory, so that we can edit the obsidian notes themselves
-      safely.
-    - Must be persistent!
-    name: copy_vault_to_tempdirectory
-    persistent: true
-  - description:
-    - Ensures the output folders are created
-    - Optionally removes previous output if it exists in the target directories
-    name: prepare_output_folders
-navbar_links: []
-obsidian_entrypoint_path_str: ./
-resolve_output_file_links: true
-site_name: Obsidian-Html/Notes
-toggles:
-  allow_duplicate_filenames_in_root: true
-  compile_html: true
-  compile_md: true
-  debug_filetree_keys: false
-  external_blank: false
-  features:
-    backlinks:
-      enabled: true
-    breadcrumbs:
-      enabled: false
-    callouts:
-      enabled: true
-    code_highlight:
-      enabled: true
-    create_index_from_dir_structure:
-      enabled: true
-      exclude_files:
-      - .gitignore
-      - favicon.ico
-      - not_created.html
-      exclude_subfolders:
-      - .git
-      - __src
-      - md
-      - obs.html
-      homepage_label: index
-      rel_output_path: obs.html/dir_index.html
-      styling:
-        show_icon: true
-      verbose: false
-    create_index_from_tags:
-      add_links_in_graph_tree: true
-      enabled: false
-      exclude_paths:
-      - .gitignore
-      homepage_label: index
-      match_on_inline_tags: false
-      rel_output_path: obs.html/tag_index.md
-      sort:
-        key_path: ''
-        method: none
-        none_on_bottom: true
-        reverse: false
-        value_prefix: ''
-      styling:
-        include_folder_in_link: false
-      tags: []
-      use_as_homepage: false
-      verbose: false
-    dataview:
-      enabled: false
-      folder: obs.html/export
-    embedded_note_titles:
-      enabled: true
-      hide_on_h1: true
-    embedded_search:
-      enabled: false
-    eraser:
-      enabled: true
-    folder_notes:
-      enabled: false
-      naming: folder name
-      placement: outside folder
-    footnote_md_extension:
-      enabled: true
-    graph:
-      coalesce_force: '-30'
-      enabled: true
-      show_inclusions_in_graph: true
-      styling:
-        show_icon: true
-      templates:
-      - id: 2d
-        name: 2d
-        path: builtin<2d>
-      - id: 3d
-        name: 3d
-        path: builtin<3d>
-    math_latex:
-      enabled: true
-    mermaid_diagrams:
-      enabled: true
-      strip_special_chars: false
-    post_processing: []
-    rss:
-      channel:
-        description: <your description>
-        language_code: en-us
-        managing_editor: n/a
-        title: Notes
-        web_master: n/a
-        website_link: <https://your website.com>
-      enabled: false
-      host_root: https://localhost:8000/
-      items:
-        description:
-          selectors:
-          - - yaml
-            - rss:description
-          - - first-paragraphs
-            - 2
-            - <br/><br/>
-          - - first-header
-            - 1
-        publish_date:
-          default_value: ''
-          format_string: ''
-          iso_formatted: true
-          selectors:
-          - - yaml
-            - rss:publish_date
-          - - yaml_strip
-            - tags
-            - - date/
-        selector:
-          exclude_files:
-          - not_created.html
-          - index.html
-          exclude_keys: []
-          exclude_subfolders:
-          - .git
-          - obs.html
-          include_subfolders: []
-          match_keys: []
-        title:
-          selectors:
-          - - yaml
-            - rss:title
-          - - first-header
-            - 1
-          - - path
-            - - parent
-              - 1
-            - /
-            - - stem
-      styling:
-        show_icon: true
-    search:
-      add_files: true
-      enabled: true
-      styling:
-        show_icon: true
-      try_preload: false
-    side_pane:
-      left_pane:
-        close_if_empty: false
-        content_args:
-          div_selector: .content
-          rel_path: index.html
-          strip_sub_divs:
-          - .toc
-          strip_tags: []
-        contents: dir_tree
-        enabled: true
-        width: 20rem
-      right_pane:
-        close_if_empty: true
-        content_args:
-          div_selector: .content
-          rel_path: index.html
-          strip_sub_divs:
-          - .toc
-        contents: toc
-        enabled: true
-        width: 16rem
-    smiles:
-      enabled: false
-      height: 300px
-      theme: dark
-      width: 100%
-    styling:
-      accent_color: 65, 76, 253
-      add_dir_list: true
-      add_toc: <DEPRECATED>
-      flip_panes: <DEPRECATED>
-      header_template: full
-      layout: documentation
-      loading_bg_color: 22, 22, 22
-      max_note_width: 120rem
-      toc_pane: <DEPRECATED>
-    table_of_contents:
-      add_toc_when_missing: false
-      only_show_for_multiple_headers: true
-    tags_page:
-      enabled: true
-      styling:
-        show_icon: true
-        show_in_note_footer: true
-    theme_picker:
-      enabled: true
-      styling:
-        show_icon: true
-  force_filename_to_lowercase: true
-  img_alt_text_use_figure: true
-  no_clean: false
-  preserve_inline_tags: true
-  process_all: false
-  relative_path_html: false
-  relative_path_md: true
-  slugify_html_links: false
-  stdout_current_file: false
-  strict_line_breaks: auto
-  verbose_printout: false
-  warn_on_skipped_file: true
-  warn_on_skipped_image: true
-  wrap_inclusions: false
-verbosity: info
-video_format_suffixes:
-- mp4
-- webm
-- ogv
-- mov
-- mkv